g88408.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML019125.1:73323-82308[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0082 2.1 11.6 1.8 1 23 189 211 189 211 0.96 2 9 0.0026 0.68 13.2 2.1 2 23 215 235 214 235 0.96 3 9 0.0032 0.83 12.9 1.8 2 23 241 263 240 263 0.92 4 9 0.00011 0.029 17.5 2.0 1 23 270 293 270 293 0.97 5 9 2.3e-06 0.00059 22.8 1.0 1 23 299 322 299 322 0.98 6 9 4.7e-05 0.012 18.7 3.7 1 23 328 350 328 350 0.97 7 9 0.00027 0.071 16.3 3.3 1 23 356 379 356 379 0.97 8 9 0.0033 0.86 12.9 1.9 1 23 387 409 387 409 0.97 9 9 0.0056 1.5 12.1 0.3 2 23 413 435 412 435 0.96
Sequence Information
- Coding Sequence
- ATGACTACACCCGTAGCGCTATTTCAATGCAGATTATGTTTAAATAGAACTCCAAGTAGAGTTAACATATATGGCGGAGATTTTCCCCGAATGCTAGAGATATTAACATCCATAAAGGTACATGAAGGGGATGGCTTACCGAAATATAGTTGTACAAAATGTGCAAAAGAAGTTCAAATGGCTTTGATGGTTAAGAAACGTATTATAAAGGCACATCAAATGCTATTAGAAGCTCTAAAAAAAAGGGCAATAGTTCAAAGGATAGCGACAACCCCTATTGTTAATAAAGTCGAATCTTCAGTACCAAAAATGACAAAAACCACTAAGCAAAAAATAGTTTCTAAACcaataataaaacaaaatcaaaTTCAAATAAAGTCAGAATTAGTTGATATCTCAAATGAAGCAACAACAGATGAAGATGCAAATGATAACTCAAATGAAGTAACAACAAATGAAGATCCAAATGAAGGAAGTGTAAAATGTGATATAAAAACTGAAAAAGTAGAAAAAACAAGTCAACCAAacacaaataaacaaagaaagggAGCACAGAATACTAGCTTTACTTGTGAAACATGTAATTTAAGTTTTTCAGacAGATATCCGTTCTATCTGCACAGCTTAAAACACAAACAAAGCCAATGTCATATTTGCGACCGATTCATTAGAACAGGCAATTTAAAGAAGCACATCATGATGCATACAGCAGGTCCTTCGGAATGTTCCACTTGTGGAGCCACATTCAAAAACTTCAACGGTTTAAGAAGTCACATATTTCATTACCACAAGCATACTGCTAATCAGTACATTTGTGAAGAATGTGGTAAAACCTTCCGATTAAAATATAAGTTCTTGTTGCATAAGAAAAAAGTTCATGGAGGTGTAAGGAACTTTAAATGCAGTACTTGTGGAAAAGCTTTCTTTACCAATACCGATTTATTAATCCATGTTCGAACCACTCACGAAAAACTGAGACCTCATGTTTGTGAGTATTGTAGTAAGGGCTTTTCATCTAGAAAAGCTTTAAAAACACATAAAAGACAACATACTAATGAGAAACCATTCGTCTGTTACCATTGTTCAGAAGGTTTCAAGCAACGAGTTTCATTGCGATCTCATTTGAAATCAAAACATGGAATAGAGGAAGCCCTGGAATTCTTTTGTAAAACTTGTGAGAAAGGTTTCGCAACAGATCACGCTTTGAGTACACATGAAAGGTTACATGAAAATAAGAAGTGTGATATTTGCTCAGAAAATTTTGCTGGAGATGAATATCTGAAAAACCATCGTAGAGAAGTTCATCAAGTAGAAGTAGAAATGACACAAGatagttaa
- Protein Sequence
- MTTPVALFQCRLCLNRTPSRVNIYGGDFPRMLEILTSIKVHEGDGLPKYSCTKCAKEVQMALMVKKRIIKAHQMLLEALKKRAIVQRIATTPIVNKVESSVPKMTKTTKQKIVSKPIIKQNQIQIKSELVDISNEATTDEDANDNSNEVTTNEDPNEGSVKCDIKTEKVEKTSQPNTNKQRKGAQNTSFTCETCNLSFSDRYPFYLHSLKHKQSQCHICDRFIRTGNLKKHIMMHTAGPSECSTCGATFKNFNGLRSHIFHYHKHTANQYICEECGKTFRLKYKFLLHKKKVHGGVRNFKCSTCGKAFFTNTDLLIHVRTTHEKLRPHVCEYCSKGFSSRKALKTHKRQHTNEKPFVCYHCSEGFKQRVSLRSHLKSKHGIEEALEFFCKTCEKGFATDHALSTHERLHENKKCDICSENFAGDEYLKNHRREVHQVEVEMTQDS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -