g14044.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015102.1:722766-728331[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.7 4.5e+02 4.3 1.1 2 16 51 65 50 72 0.83 2 14 3.2 8.2e+02 3.5 4.1 1 11 107 117 107 118 0.95 3 14 0.084 22 8.4 1.8 1 23 135 158 135 158 0.93 4 14 0.0078 2 11.7 4.9 1 23 167 189 167 190 0.94 5 14 7.6e-07 0.0002 24.3 0.8 3 23 201 221 200 221 0.99 6 14 9.6e-06 0.0025 20.8 0.4 1 23 227 249 227 249 0.98 7 14 0.9 2.3e+02 5.2 0.5 2 20 354 372 353 375 0.77 8 14 0.11 30 8.0 0.5 1 11 409 419 409 431 0.89 9 14 4e-06 0.0011 22.0 0.2 1 23 437 460 437 460 0.92 10 14 0.0081 2.1 11.6 8.0 1 23 470 492 470 493 0.94 11 14 0.011 2.9 11.2 2.3 3 23 504 524 503 524 0.94 12 14 6.1e-06 0.0016 21.5 0.1 1 23 530 552 530 552 0.96 13 14 5.4e-06 0.0014 21.6 2.2 1 23 558 580 558 580 0.98 14 14 0.0014 0.36 14.0 0.2 1 23 586 609 586 609 0.96
Sequence Information
- Coding Sequence
- ATGAAAAAATACGTAGATGTAATAATAGAAACAGAAGAAGAACCAACAAAACCAAAGCGTGAAAGGGGAATGAAAGACATCCCCAGTAAAATGTCTCCCAAAGAATATGAGACCTATTGTGTTCAACCAGCTTCACCCGAGGAACCACTAAAGTGTAAAAAATGCTCATTAAGATTTTTCAATAACGTTGAATTAGgattccattccataaaacacaATGACAAAGGACAATACGAATGTCATGTATGTGGGAATTATTCAAACCAAAACAAACGAGCATTTGATATTCACATCAGACAACACGAaggtattaaaaaatataaatgtcgAATTTGTGATAAGCAGTTCACTTGTCTAAGACCAGCATACGAACATCAATATTTCCATGGAAAAGAAAAATCCTTCGCATGTGATATCTGTGGGCTAAAATGCTTCACTTCCCTTTCAGTTCAGAACCACAAGAAGAAGGCTCACCAGGAATCGCCAATTAAGAAAAAATACGACTGCAACGTATGCAACAAGCATTACGCAAATTATTCTGGACTGGCCCATCACAATTTAAGACATCACAGAGAACTGTGCCAGCGAATGCCTACCTTATGCGATATTTGCGGAAAGGAATTTTCTACAGAAGGGCAGCTTAGAAAACATAAACGAACGCATTCAAAAGAACCTGAATATTCATGTCAACTTTGTTCCAAGAAGTTTACCCAGCCTGCTGGTCTAAAAAATCATCAAGCAGTACATACAGGAGAAAAGAAtgcCAAGTATGAATTTGTAGATATTGGAACAATAAAAGAAAATGATGTAGAAGTGATAATACAAATAATAGAAGACCCAAAAAAACCAAAGCGCAAAAGAGCCAAGAGAGACACAACACTAATAAAGGAATCAAAAAAACCAAAGCAGCACAAAAGAGGCATGAAGGACATAATACAAATAGAAGAATCAAAAAAACCAAGGCAGCTCAAAAGAGGCATGAAGGACATCACAGCAAAAATGACACCGGAAGAATATGAAACCTACCTCATCCAACCTACCGACTCTGATGTGCCACTAAAGTGTGACAAATGCTCCGTCACGTTTAAAAACGAAGTCGAAAAGGGCCTTCATTCTATAAAACACAATGAAAAAGGATTGTATGAATGCCACGTTTGTGACTCTTTACACGAGTACAAAAAATCATTTGATAAACATCTCAGGAACCACCTAGGTATCAAAAAGTTCAAATGCCCGATTTGCGAAAAACAGTTTACTGAAATAAAGCCTGCGTATGAACACAAGTATTTACATAGTAAAGAAAAACCCTTCGAATGCGACATTTGCGGGAAAAAGTTTAGTACGTCAAATGCATTAAGAAGCCACAAAATCGGGGCTCACTACGAAATCCTAAATGATCATGAAAAATTTGAGTGTAAAATATGCAACAAACATTACGATCATAGTTCCAAGTTGGCACGTCACAACTTTAGACACCACAAAGAACTATGCAAACAGAAGCCTGCTTTATGTGAAACCTGTGGCAAGGACTTCTCCTGCAAATCAGAACTTAAGAAACACTCCGTGGTTCACTCCAAAGACACGCCCTACGCTTGTGATCAATGTCCGAAAAGATTCTCAAGACCAATCAACCTTAAAGAACACCTAGTGGTACACACTGGAGAGAAAAAGTATTCTTGTGGTGAGTGTGAGAAGAAGTTTGCCCACTCTTCTTCGCTTCGGAACCACTTAAAGCTGCATACCGGGGAAAGGCCCCACACTTGTATGGTGTGTGGCAAAGGCTATATTGCTGCTGCGAATTTGAGGTATCATCTTAATAGCGTTCATAAAACACAAATTAGTGTTAACACAAACTAG
- Protein Sequence
- MKKYVDVIIETEEEPTKPKRERGMKDIPSKMSPKEYETYCVQPASPEEPLKCKKCSLRFFNNVELGFHSIKHNDKGQYECHVCGNYSNQNKRAFDIHIRQHEGIKKYKCRICDKQFTCLRPAYEHQYFHGKEKSFACDICGLKCFTSLSVQNHKKKAHQESPIKKKYDCNVCNKHYANYSGLAHHNLRHHRELCQRMPTLCDICGKEFSTEGQLRKHKRTHSKEPEYSCQLCSKKFTQPAGLKNHQAVHTGEKNAKYEFVDIGTIKENDVEVIIQIIEDPKKPKRKRAKRDTTLIKESKKPKQHKRGMKDIIQIEESKKPRQLKRGMKDITAKMTPEEYETYLIQPTDSDVPLKCDKCSVTFKNEVEKGLHSIKHNEKGLYECHVCDSLHEYKKSFDKHLRNHLGIKKFKCPICEKQFTEIKPAYEHKYLHSKEKPFECDICGKKFSTSNALRSHKIGAHYEILNDHEKFECKICNKHYDHSSKLARHNFRHHKELCKQKPALCETCGKDFSCKSELKKHSVVHSKDTPYACDQCPKRFSRPINLKEHLVVHTGEKKYSCGECEKKFAHSSSLRNHLKLHTGERPHTCMVCGKGYIAAANLRYHLNSVHKTQISVNTN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -