g14093.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- Gzf1
- Assembly
- GCA_003013835.2
- Location
- ML015102.1:1281854-1291710[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.1 8.1e+02 3.5 1.0 2 23 65 87 64 87 0.94 2 20 0.022 5.8 10.2 0.3 2 23 93 114 93 114 0.95 3 20 0.029 7.6 9.9 2.1 2 23 151 172 150 172 0.94 4 20 0.003 0.78 13.0 0.6 2 23 182 204 181 204 0.95 5 20 0.056 15 9.0 1.0 1 23 215 238 215 238 0.97 6 20 3.3e-06 0.00086 22.3 0.5 1 23 247 269 247 269 0.95 7 20 0.028 7.3 9.9 0.3 2 23 522 543 522 543 0.96 8 20 0.013 3.3 11.0 2.4 2 23 580 601 579 601 0.94 9 20 0.013 3.3 11.0 1.8 3 23 612 633 610 633 0.94 10 20 0.042 11 9.4 1.3 1 23 644 667 644 667 0.96 11 20 5e-06 0.0013 21.7 0.2 1 23 676 698 676 698 0.95 12 20 0.72 1.9e+02 5.5 1.1 2 23 823 844 822 844 0.96 13 20 0.23 60 7.0 5.1 3 23 873 894 871 894 0.95 14 20 0.0011 0.3 14.3 0.4 2 23 900 921 900 921 0.96 15 20 0.025 6.4 10.1 2.4 2 23 958 979 957 979 0.94 16 20 2.4 6.3e+02 3.8 3.5 2 23 989 1011 988 1011 0.96 17 20 0.0041 1.1 12.6 3.7 1 23 1022 1045 1022 1045 0.97 18 20 7.3e-07 0.00019 24.3 0.5 1 23 1054 1076 1054 1076 0.95 19 20 8.2e-05 0.021 17.9 5.6 1 23 1081 1103 1081 1103 0.99 20 20 2.4e-07 6.3e-05 25.9 1.3 1 23 1109 1131 1109 1131 0.99
Sequence Information
- Coding Sequence
- ATGACAGAAGAAGAGCggcaaaatataaaaaaatttgtatggGAGTGTAAAGTTTGTTGTAAAGAACATGAGAGCAAAGAGAGTTTACTTGAACACTACGAAATGCATAAAACAATAGCAGAACATTTAGAGGATTGTAGTGAAGATCAAGCAGATAAATACGTATTTTTGGATACAGATGACGAAAAAGTTACTTGTGACCTGTGTTTGGCGACTTTAAAAAATAAGGCGACCTATCATATTCACCTTCAACAGCGCCATAGATCGAAAGAAAACTACTGTGAAATATGCAAGTACAACTTCGCAAATGAGTTCAGCTTGAGCATCCACAATGCCACACACAGTTCTGACCCCTCAACATTTGTTTGTGTCATTTGTAAAAGTTTTAGTACTGTAATTACAGACTCcttgttttttcatattcgtacAGAACACTTAAAAGAAGAATTATACTGTAGTGAATGTGACACCCATTTTTTCTCAAACACTTGGCTTGAAGATCACAAAATgtttcataaaatgtataaagaGTTTGAACCGAAGCGTTGCAAAGTTTGTTCTCGCGAATTTCCAACCACTAAGCAATTGCTGGTCCACATACAAGAAAGCCATAGCGACAACTCTCTCATCaaattcaaaaaatataaatgtaCTGCGTGTGATTTGACTTTACCATATAAAAGGAATCTGGATCTACACATCAAACATATCCATTCCAGCGAGAAGGAGCAAAAATCTTTCCTTTGCACTGACTGTGGACGTTCATTTGCTTCTAAAAACCCTTTAACGAAACATATGAACATACACAAAGAAGGACAATCTTCCAGAAATGATAACCTTGATGTGGAATTGGCAATTGACATGGTTCCGGCTTATTTGTTAATACGTTCTCCTAATACAGCTAATGTTGAAACAGTCCGCAAAGAACAAGACATACCAAGAGATCCTTTGGAAGTTACAAACACAGACGAAACAAAAACAAACGAATCAAAAAAAGAcgaaacaaaaacaaacaaaacaaaaacagacgAAACAAAAACAAACGAAACAAAAACAGACGAACCAAAAACAAACGAAACAAAAATAAGCGAAAGAAAAACAAACAGAGAAAAACCAGAAAGTAAAAAAGCAAAGACTAAAGAGAATACCAGACTTACTTGTACCGACTTAAAAGTACcgaaaataatcgaaaaatataaaaatccgTTCGATTATTTTGCTTTTGAGAATAATCTACTTCCTGCTTATGTATTAAAGAAACGATCGTTGGTAGAAAAAGAGATGCAAAATACATCGACAAGTGACGTTATGTGGAACTGCAGGATTTGTTGTAAAGAACACGATTGCAAAGATAGCTTGTTTGATCATTACGAGATGCATAAAATAGTAGCAGATCAATTGCAAGATTCGAGTGAAGATAAAGAAGAAACTGGTGATAACTTGATGTTTATGGATTCGGTTAAAGACGACGAAAAAGTTACTTGCGATCTTTGTCTGCTTACTTTTAAGAATAAATGGAGCTACCATTGTCACTTCAAACGAGCTCACAGAATCAAAGAGAACTACTGCGAAATCTGTAAGAGGAACTACGACAATGAGTACAGCTTGAGCATCCACAATGCCACGCACAGTTCTGACCCCAAAACATTCGTTTGTGTCGTTTGTAAAAGTTTTAGTACCCAAATTACAGATTCCTTGTTCTTCCATATTCGTTCAGAACACATAAAAGAAGAATTATACTGTACGGAATGTGATAGACATTTTTTCTCAAACACTTGGCTTGAAGATCACAAAATGTTTCACAAAATGTATAGAGAGTTTGAACCGAAATGTTGCAAAGTTTGCTCTCGCGAATTTCCAACCACTAAGCAATTGCTGGTCCACATACAAGAAAGCCATAGCGACAACTCTTTCATCaaattcaaaaaatataaatgtaCGGCGTGTAATTTGACTTTACCTTATAAAAAAAATCTGGATCAACACATGGAACATATCCATTCCAGCGAGAAGGAGCGACAATCTTTCCTTTGCACTGACTGTGGACGTTCATTTGCTTCTAAATGGCCTTTAACAGCACATATGAAAATACATAAAGAAGGACAatttttcggaaaTGCTTCGTATAATGATAATACCACCCATACGAATACTCAAAACAACTTTGATGTGGAGTTGGCAATTGGCGCGATCCCTGCCTATGTGTTAATAAGAACAAAGCCTAATACGAATAAGGATGAAACAACGTTTAGTGGAGAACAAAAGATGATAAACGCTTCATTGGAAAATACGAAGacagaagaaataaaaacaaccAGAAAAAAGTCAATTACTATAAAGGATTCCGGCGTcattaaaaatatcgaaaaatataaaaatccatTTCATTATTCTACCCACTTGGAGTATCCAGAGGATCCGCCATTGACAGAAAAAGAGCCACAAAATACAGAAGAATTTTTATGGGagtgtaaaatttgttataaagaACATGAGAGCAAAGAGAGTTTATTTGAACACTACGAAATGCATAAAACAATAGCAGATCAATTAGATGATTATAGTGAAGATGTAGCAGATAAAATACTTTTGGATCCAGAAGAAGCACAAGTTATATGCCACCTTTGTCTAGAAACGTTTACAGATAAGTGGAAGTATCATCATCACATTCAACAGCGCCATAAATCAAGAGACAACTACTGTGAAATCTGTAAGCGGAATTTTGCGAATCAGTACAGCTTGAGTATCCACAATGCCACACACAGTTCTGATCCTAAAACATACGTTTGTGTTATTTGTAAAAGTTACAGTACTCAAGTTACAGATTCCTTGTTCTTCCATATTCGTTTAGAACACTTACAGGAAGAATTATACTGTAGTGAATGTGACACCCATTTTTTCTCTAAAACTTGGCTTGAAGATCACAAAATgtttcataaaatgtataaagaGTTTGAACCAAAGCGCTGCAAGCTCTGCTCTTGCGAATTTCTAAACACTAAGCAATTGCTCAACCACATACGTGAAAGCCATAGCGACAACTCTCTCATTACattcaaaaaatataaatgttcGACATGTAATTTGACAGTACCTTATAAGAAAAATCTAGATAAACACATGAAACATACGCATTCTAGTAAGAAGGAGAAGCAGTCTTTCCTTTGCACTGACTGTGGACGTTCATTTGCTTCTAGAGGATCTTTAACACAACATATGAAAATACATAAAGAAGGACAGTATGTATGTTCTTTGtgcaacaaaaaatttaaaaagaattgttACTTGAAGATCCATCTTCGAACTCATACTGGAGAAAAGCCATACAAATGTCATGTATGTGGCAAAACTTTTGCCCAGAGACCATCACTTAATGTCCATATACGACAGCATACCGGGGAACGTCCTTACTCGTGCGGGAAGTGCCAAAAAGGTTGTTTTACTAAAACTATTCGAGACAACcatgaaaaaacttgtaagaaatag
- Protein Sequence
- MTEEERQNIKKFVWECKVCCKEHESKESLLEHYEMHKTIAEHLEDCSEDQADKYVFLDTDDEKVTCDLCLATLKNKATYHIHLQQRHRSKENYCEICKYNFANEFSLSIHNATHSSDPSTFVCVICKSFSTVITDSLFFHIRTEHLKEELYCSECDTHFFSNTWLEDHKMFHKMYKEFEPKRCKVCSREFPTTKQLLVHIQESHSDNSLIKFKKYKCTACDLTLPYKRNLDLHIKHIHSSEKEQKSFLCTDCGRSFASKNPLTKHMNIHKEGQSSRNDNLDVELAIDMVPAYLLIRSPNTANVETVRKEQDIPRDPLEVTNTDETKTNESKKDETKTNKTKTDETKTNETKTDEPKTNETKISERKTNREKPESKKAKTKENTRLTCTDLKVPKIIEKYKNPFDYFAFENNLLPAYVLKKRSLVEKEMQNTSTSDVMWNCRICCKEHDCKDSLFDHYEMHKIVADQLQDSSEDKEETGDNLMFMDSVKDDEKVTCDLCLLTFKNKWSYHCHFKRAHRIKENYCEICKRNYDNEYSLSIHNATHSSDPKTFVCVVCKSFSTQITDSLFFHIRSEHIKEELYCTECDRHFFSNTWLEDHKMFHKMYREFEPKCCKVCSREFPTTKQLLVHIQESHSDNSFIKFKKYKCTACNLTLPYKKNLDQHMEHIHSSEKERQSFLCTDCGRSFASKWPLTAHMKIHKEGQFFGNASYNDNTTHTNTQNNFDVELAIGAIPAYVLIRTKPNTNKDETTFSGEQKMINASLENTKTEEIKTTRKKSITIKDSGVIKNIEKYKNPFHYSTHLEYPEDPPLTEKEPQNTEEFLWECKICYKEHESKESLFEHYEMHKTIADQLDDYSEDVADKILLDPEEAQVICHLCLETFTDKWKYHHHIQQRHKSRDNYCEICKRNFANQYSLSIHNATHSSDPKTYVCVICKSYSTQVTDSLFFHIRLEHLQEELYCSECDTHFFSKTWLEDHKMFHKMYKEFEPKRCKLCSCEFLNTKQLLNHIRESHSDNSLITFKKYKCSTCNLTVPYKKNLDKHMKHTHSSKKEKQSFLCTDCGRSFASRGSLTQHMKIHKEGQYVCSLCNKKFKKNCYLKIHLRTHTGEKPYKCHVCGKTFAQRPSLNVHIRQHTGERPYSCGKCQKGCFTKTIRDNHEKTCKK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -