g2682.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML014996.1:3402118-3405026[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0012 0.31 14.2 0.5 3 21 187 205 186 206 0.95 2 13 0.00017 0.045 16.9 0.3 1 23 223 245 223 245 0.97 3 13 0.00015 0.04 17.1 1.0 1 23 250 273 250 273 0.93 4 13 0.012 3.2 11.1 3.3 1 23 279 301 279 301 0.97 5 13 1.3e-06 0.00033 23.6 0.5 1 23 307 329 307 329 0.98 6 13 1.1e-05 0.003 20.6 3.7 1 23 334 356 334 356 0.98 7 13 0.026 6.8 10.0 2.0 1 23 362 386 362 386 0.92 8 13 0.0036 0.94 12.7 3.0 1 23 392 414 392 414 0.98 9 13 0.5 1.3e+02 6.0 0.6 3 23 421 442 420 442 0.96 10 13 1.9e-05 0.005 19.9 3.2 1 23 447 469 447 469 0.98 11 13 0.0018 0.46 13.7 0.2 1 23 475 497 475 497 0.94 12 13 0.013 3.3 11.0 0.2 3 23 504 524 502 524 0.94 13 13 0.43 1.1e+02 6.2 7.6 1 21 530 550 530 551 0.95
Sequence Information
- Coding Sequence
- ATGGAGGTAAAGGAAGAACCGTTTGATGCTTTTTCTGAAGAAAAGACTAATATTTCTCAAGATTCCTTCAATATGACTCTAAATAATATTAAAGAGGAAACACCGGATTATCCATTCGAAATGGTAAATCTTGCACCTGCATTTTTATTAACAAATATAAAAAGTGAGCCAAATGTAGATTCTACAGCTCAGGATATTCCAAATGAAATTGTAAAAGTTAGAGCTGATGAGTACTTTGTTAGTACGACTGATTTAGCAAATATACAAATGGAAGAAGCCGAAGTTGATTGTACTACAGTTAAAACTGAACCATTAAATGAAGACATTGATTCAACAAATCTGAATGAAGAATATAATTTACCAAGCTTGAATGAAGAATGTGATTTACCCTCAATAAAAGTTGAAGTTACTAATTATGAATATCTTGATGAAATACCTTCGAATTGTCAAACCGAGCAGAGGTCTCCATCAAAATTTGTTAAACGTCCAGatttTTTAGTCCCATCCAGAAGAAAACGTCATTTGATATCTCATTTTGGAAAAAACCGTTAtgctatttgtcatttttgtggaaaaatattcaaaacactAGTTCAGTATATAATGCACTACAGAAATTATAAAGTTAAGGGACGACCTAATTTAACTACATCAAATGAATCAATTTTTCCTTGTAAAATTTGTCCCCTACAATTCGATTCCAAAAGAAATTTGGCAGATCATTTTAAAATACATTACAGTAAGCCTTATGAATGCAAGTTATGCTTTAAACAGTATAGTGTTAAATCTACGTTGAAAAGGCATCTAGCAGCACTGCATAGCGTATTAAAACCATATAAATGCGAAATATGTTTTAGAGAATTTGCTTTATCTTGTCAGTATAAGTCTCACATGGTATACCATAAGTTCGGTAAACAATTCACTTGTGATATCTGCTCCAAAGGTTTTTATCAAAAGAGTAGTCTATTGAGACATATAATAGTACATGAAGGAATCAAGTTTAAATGTCACCTTTGCTCAAAGGAGTACACTAGAAAAGTAACGCTAGAATCCCATATGAGGTTGCACTCAGGAGAACACGAATTTAAGTGTCATATttgtataatagaaaaaaaatttacatctAAAGGCGCCCTAAGACTGCACCTGATGAATCATGCTGGGGAGAAGCCTCACAAGTGCGATATTTGTGGACAGAGATTTCTAGAACGACAGAAATTACTGAAACATCTAAAAACACATGAGAAAGCTCAAAACAACTGTGAATTCTGCAGTGCATCATTCCTATACAAAATCAGACTACAAAGACATCTATTGACTGAGCATGGCGAAAATCCATTCAAATGTCACAAATGCGAACAGAAATTTGTTACACAGAGAGAACTGAATTTACACATGTCTGTACATGttgaatcgaaaatctatgagTGTGAACTCTGTGCGAAAAGGTTTACCAAAAGGGCAGCGTATGTTCGACATCTAGGAGGCCATGGGCAAAGTCCGTTTGGATGTGGTGTGTGTACTGAAACATTCTCATCAGAAAGAGGACTGCGTGAGCATTATGTAAATCATCCAGGAGAGAAGCCGTTTCATTGTGATGTGTGTCTTAAAGGTTTTCATCACAAGAGATCTTTACATAAGCATATTTGTGAAGGAAAACCTCCAGGTACTTAG
- Protein Sequence
- MEVKEEPFDAFSEEKTNISQDSFNMTLNNIKEETPDYPFEMVNLAPAFLLTNIKSEPNVDSTAQDIPNEIVKVRADEYFVSTTDLANIQMEEAEVDCTTVKTEPLNEDIDSTNLNEEYNLPSLNEECDLPSIKVEVTNYEYLDEIPSNCQTEQRSPSKFVKRPDFLVPSRRKRHLISHFGKNRYAICHFCGKIFKTLVQYIMHYRNYKVKGRPNLTTSNESIFPCKICPLQFDSKRNLADHFKIHYSKPYECKLCFKQYSVKSTLKRHLAALHSVLKPYKCEICFREFALSCQYKSHMVYHKFGKQFTCDICSKGFYQKSSLLRHIIVHEGIKFKCHLCSKEYTRKVTLESHMRLHSGEHEFKCHICIIEKKFTSKGALRLHLMNHAGEKPHKCDICGQRFLERQKLLKHLKTHEKAQNNCEFCSASFLYKIRLQRHLLTEHGENPFKCHKCEQKFVTQRELNLHMSVHVESKIYECELCAKRFTKRAAYVRHLGGHGQSPFGCGVCTETFSSERGLREHYVNHPGEKPFHCDVCLKGFHHKRSLHKHICEGKPPGT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -