g102883.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML023046.1:13166-27323[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 26 8.2 0.2 2 21 143 162 142 163 0.93 2 11 0.52 1.4e+02 5.9 3.5 3 23 174 193 172 193 0.84 3 11 0.00021 0.055 16.6 4.3 1 23 199 221 199 221 0.97 4 11 3.5e-07 9.1e-05 25.4 0.7 1 23 227 249 227 249 0.98 5 11 5.7e-05 0.015 18.4 1.6 2 23 256 277 255 277 0.96 6 11 0.00031 0.081 16.1 2.6 2 23 289 310 288 310 0.97 7 11 3.9e-05 0.01 18.9 0.4 1 23 315 337 315 337 0.95 8 11 9.5e-05 0.025 17.7 5.2 1 23 343 365 343 365 0.98 9 11 3.8e-06 0.00098 22.1 3.0 5 23 375 393 372 393 0.94 10 11 1e-05 0.0026 20.8 2.8 1 23 399 421 399 421 0.98 11 11 0.00067 0.17 15.0 5.5 1 23 427 449 427 449 0.98
Sequence Information
- Coding Sequence
- ATGTTTAATTCTAGTATCTGTgagaaaaataatgtttttttggTACCTGAAGATATTGAAAACTCTTGTCGTTTATGTCTCAACAAAAATGCTTTGGTAGATATATTTAAGACTAAATATCAAGAAACTACTTTTGCTGATATTTTTACAATGGTTTCCATATTGGAGATTAATCCCACAGATTATTTGCCAAAGAAGATATGTACTGTCTGTGAAAACTTAGTAATTGAATTTTATAAATTCAGTGAAAAAGTGAAAGACACACAAATAATTTTACGTAATTCTCTCATGCTAATTCAAGAACAAGAAGAACAAAAGAATGAAAATACAGAAACTTTAGAAACTGATAAATTTGATTATATTTCAGATGATGGTACTAATCAAGAGTGTAGCCATATTGTGCTTAAGACTCTTGAAAAAACCATAACATGCTCATTTTGCAACAGTCAATTTGAAACATATTCTGCATATATTGCACACAGAAAAATGGAAGCTGACTCAAGAAGAAAAAAACAACATTGCAGTGTTTGTAAAAAATTTATTAGCACATATAAACTTAAAGATCATATGAACTCACATACAAAAGAAAAACCTCATCAATGTCAGATTTGTGGTGAAAAATTTAGGTTCTTATCTAGTCTATCTAGACATAAATTCAGACATAGGGACAAAAAGCCCCACGTATGTCACATTTGTGGCAAAGGTTTTATTCAAGCTCCATCTCTAAATGATCATATTAGAACACATAGTGGAGAAAAATCCTGTATGTGTAATGTCTGTggaataacttttattacaaagcATGCTCTAGGTAATCATATAAACATGCACAAAGTCAAAGATAGTAATAATTCAAGTCAATTAACTTGTCAAAAATGCAATAGATCTTTTTTATCAAAGTACTTGCTCAAACAACACTTGCAGACACACTATGAGAAAGAGTTTTTATGCAGTCAATGTGGGAAAAAATTTGCCACAAAGGCTTTGTTAGATTCACATGTGAAGGTTCATTCTGAAGTTAAACCATATATTTGTGACATTTGCGAAAAAGCGTTTTGTCATAAAAATAGTCTTCTAAAACATAAAAAGTCCCATTCAGGAGAAAAACCTGCCATCTGTATTGTGTGTGGtaaaaaattttctcaaaaaagtcATTTGACATATCACATGAGAAAGCATAGTGGTGAAAGGCCTTATAGTTGTAACTTTTGTGAAAAAACTTTTGATCACTCTGGATCCCTTAAAATTCATACCCGGATACACACTGGAGAGAAACCATATAAATGTGATGTTTGCTTGAAATCATTTTACGATTGTAGTAGTATGAAAAAACACACAAAACAACATAGTAGCGAATATCGACACTTTTTGGTAGTTTAA
- Protein Sequence
- MFNSSICEKNNVFLVPEDIENSCRLCLNKNALVDIFKTKYQETTFADIFTMVSILEINPTDYLPKKICTVCENLVIEFYKFSEKVKDTQIILRNSLMLIQEQEEQKNENTETLETDKFDYISDDGTNQECSHIVLKTLEKTITCSFCNSQFETYSAYIAHRKMEADSRRKKQHCSVCKKFISTYKLKDHMNSHTKEKPHQCQICGEKFRFLSSLSRHKFRHRDKKPHVCHICGKGFIQAPSLNDHIRTHSGEKSCMCNVCGITFITKHALGNHINMHKVKDSNNSSQLTCQKCNRSFLSKYLLKQHLQTHYEKEFLCSQCGKKFATKALLDSHVKVHSEVKPYICDICEKAFCHKNSLLKHKKSHSGEKPAICIVCGKKFSQKSHLTYHMRKHSGERPYSCNFCEKTFDHSGSLKIHTRIHTGEKPYKCDVCLKSFYDCSSMKKHTKQHSSEYRHFLVV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -