g14062.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015102.1:987195-992109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00071 0.18 15.0 1.7 1 23 12 34 12 34 0.91 2 14 0.00049 0.13 15.4 3.6 1 23 40 63 40 63 0.97 3 14 4.9e-05 0.013 18.6 1.8 1 23 76 99 76 99 0.96 4 14 1.2e-05 0.0031 20.5 0.2 2 23 109 130 108 130 0.97 5 14 1.7e-05 0.0044 20.1 2.6 1 23 136 158 136 158 0.97 6 14 2.3 5.9e+02 3.9 2.1 2 17 210 225 209 231 0.78 7 14 0.25 66 6.9 1.2 1 23 237 259 237 259 0.94 8 14 0.0011 0.29 14.3 2.0 1 23 265 287 265 287 0.91 9 14 1.2e-05 0.0032 20.5 1.7 1 23 293 316 293 316 0.97 10 14 0.0043 1.1 12.5 3.9 1 23 328 351 328 351 0.96 11 14 7.3e-05 0.019 18.1 0.2 2 23 361 382 360 382 0.97 12 14 1.5e-05 0.0039 20.2 2.8 1 23 388 410 388 410 0.98 13 14 1.9e-05 0.0049 19.9 1.0 1 23 416 438 416 438 0.98 14 14 0.00033 0.085 16.0 0.4 1 21 444 464 444 465 0.94
Sequence Information
- Coding Sequence
- ATGCACATACGCGCGCATGAAGGAATAAATAAGTACAAATGCCCGATGTGTCCAAAGACCTTCAAGAAAAGTAAGGATGCATTGGAGCATACTTACTTTCATACTGGTGAGAAACCTTTTCAATGCGAAGTATGTGGAAAACATTTTATGTTTAGCAAGAGTTTGTCAGATCACAAAAGAAACACCCATTATGAAGCAATATCTGGAAAACCTATTCAGAATAAATACGACTGTAAAGTGTGCGGTAAGCATTATGAAACTCGCTCAGGTTTAGTCCGCCATTACTCCTCAAATCACAAAGAGGTAGGCTATGATTATTCCGTTGTTTGCGATATTTGTGGCAAAACCATATCCACCAGAACCAAGCTGAAGATCCATTTAAGAGTACATACTGGATTCAAATCACACGTGTGCGAGGTTTGCCATAAAGGATTCTCCAATAAGCAAGAACTGGAAAACCACTCTAGAGtccatactggtgaaaaaccAAAACGAACGAAACGAAAATACATAAAGCGAAAATCGAAAGAAAACGGAGAAAGTAAACCGAAGAAAAAACGACCTCGAGAAAATTATAAAAAGAATCCGCAACTCTTAGCCAAACCCTTAGACCTAGATGAGCCGTTAAAGTGTAAACACTGTGCCAAGGACTTTTACAATAACTTAGACTTCGCATTCCACTCCAAAGAACACAGCTCAGATGGAAATTACACCTGTCATATTTGTGACTTTACCAATAACTCCAAACCTCCATTTGACCTGCACATGCGCGCGCATGAGGGAATAAATAGGTACAAGTGCCCGCTATGTACAAAGACCTTTAAGCAAAGTAAGGATGCTTTGGAGCATACTTACTTCCACACTGGTGAGAAGCCTTTTCAATGCGAGATATGTGGTAAGCATTTTCCTTACACCAAGAGTTTGGCAGCTCACAGAAGAAACACCCATTATGAAGCCATTACTGGAAAGCCTCTTCAAAAGTACGACTGTAAAGTGTGCAGTAAACATTATGAAAGCCATTCAGGCTTGGTTCGCCATTACTCCTCAAGCCACAAAGAGTTAGGCTATGATTATTCCGTTGTTTGTGATATTTGTGGCAAAACCATTGCTACCAGAAACAAGCTGAAGTACCATTTAAGAGTACATACTGGGTACAAACCACACGAGTGTGACGTTTGTCATAAAGGCTTCTCCAAAAAGCAAGAACTGAAGATCCATGTAAGAGtccatactggtgaaaaaccgttCTCCTGTTCCTACTGTGGAAAAAAGTTTGCTCAACTCGCTCCTTACAGGTACCACATCAAAACCCACACTGGGGAGCGGTCtcatatttgtttaatttgtaaaaaAGGTTTTATATCATTGAGCAATATGAGGATTCATATGAAAAATTGCGTTCAGCCTTCCGTTAAAAACGAGGTTCAAGGTTAG
- Protein Sequence
- MHIRAHEGINKYKCPMCPKTFKKSKDALEHTYFHTGEKPFQCEVCGKHFMFSKSLSDHKRNTHYEAISGKPIQNKYDCKVCGKHYETRSGLVRHYSSNHKEVGYDYSVVCDICGKTISTRTKLKIHLRVHTGFKSHVCEVCHKGFSNKQELENHSRVHTGEKPKRTKRKYIKRKSKENGESKPKKKRPRENYKKNPQLLAKPLDLDEPLKCKHCAKDFYNNLDFAFHSKEHSSDGNYTCHICDFTNNSKPPFDLHMRAHEGINRYKCPLCTKTFKQSKDALEHTYFHTGEKPFQCEICGKHFPYTKSLAAHRRNTHYEAITGKPLQKYDCKVCSKHYESHSGLVRHYSSSHKELGYDYSVVCDICGKTIATRNKLKYHLRVHTGYKPHECDVCHKGFSKKQELKIHVRVHTGEKPFSCSYCGKKFAQLAPYRYHIKTHTGERSHICLICKKGFISLSNMRIHMKNCVQPSVKNEVQG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -