g14104.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015102.1:1344296-1352770[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0072 1.9 11.8 0.8 2 23 145 166 144 166 0.96 2 24 0.28 73 6.8 0.7 2 23 191 213 190 213 0.92 3 24 0.21 54 7.2 2.1 1 23 218 240 218 240 0.93 4 24 0.00033 0.085 16.0 1.2 2 23 277 298 276 298 0.93 5 24 0.00058 0.15 15.2 2.2 1 23 307 330 307 330 0.96 6 24 0.0013 0.34 14.1 1.9 1 23 333 356 333 356 0.96 7 24 2e-05 0.0052 19.8 0.9 1 23 362 384 362 384 0.95 8 24 1.5 4e+02 4.5 1.4 2 23 523 544 522 544 0.95 9 24 1 2.7e+02 5.0 0.7 2 23 569 591 568 591 0.91 10 24 0.00036 0.093 15.9 1.0 2 23 655 676 654 676 0.93 11 24 0.0015 0.39 13.9 1.4 1 23 685 708 685 708 0.96 12 24 0.0018 0.46 13.7 2.2 1 23 711 734 711 734 0.96 13 24 0.00045 0.12 15.6 0.4 1 23 740 762 740 762 0.92 14 24 3.8e-05 0.0099 18.9 2.1 1 23 767 789 767 789 0.96 15 24 1.1e-05 0.0027 20.7 3.5 1 23 795 817 795 817 0.98 16 24 0.0013 0.33 14.2 0.9 2 23 1031 1052 1030 1052 0.96 17 24 0.43 1.1e+02 6.2 6.2 1 23 1105 1127 1105 1127 0.97 18 24 0.11 29 8.0 0.9 2 23 1164 1185 1163 1185 0.90 19 24 0.039 10 9.5 2.0 1 23 1194 1219 1194 1219 0.95 20 24 0.0049 1.3 12.3 2.9 1 23 1222 1245 1222 1245 0.90 21 24 0.0044 1.2 12.5 0.2 1 23 1251 1273 1251 1273 0.91 22 24 3.8e-06 0.00098 22.1 1.0 1 23 1278 1300 1278 1300 0.97 23 24 0.0014 0.37 14.0 1.6 1 23 1306 1328 1306 1328 0.98 24 24 0.044 11 9.3 0.6 1 17 1334 1350 1334 1351 0.94
Sequence Information
- Coding Sequence
- ATGTCCACTCGACTACTACCTATCCAAGGAGCACCCATGTATTACATTATTGTACCAAACAACCATGTTTCTGCAGCCGTGTCATCACAAACCCCACTACTGGTGAAATCAAAACCTTCTCCACCTGCACTTAAAGTAATCCCGAAAGTTGTGATGGCATCAAATACTGTTGGATCTAGATCTTCGCCTTCATTGAAAGTAATACCAACCAAAGAGCTAATGAATTATCCGACAAGTTTGTCAAATTTACTTCCTAACCAACCAATCGCATTTCAGAGTAAAGGTCCTGTGCCCAAATATTACGCTAATCCTTTCGACTATACTCCTTATGTAAAAAACACTTTATCTTTAACCCACACACAAAAAATAGCCGAACTAGAGAAACGTAGCCAAAGCGAACGAAATTTAATGCAGGAAAAAGCGTTTTCTTGGGTTTGTAAAATTTGCAAGAAAGAATTCCACGAAAAAGAACTTCTTCTGGATCATTACGAAATGCACAAGAATACCACAGATGAGCTAGGTGATTTCGATGAAAATAACGATGCATATAACATAAGCAGCAAAGAAATCACTTGTCCAATTTGTATGACGCCGTATACCAGCATATCTAATTATCAGTCCCACGTGTCTCATAAACACAAACCAAAAGACCATTATTGTGAGACgtgtaaatataattttactgaCGATTATTACTTGAGTCTACACAATGCCATCCACAATGAAGATCCAGAATTGTATGAGTGCGTGGTATGCAAAAAGTTTAAAACAAAAATCAGCAGAACGTTGTACGAGCATATaatcaaagagcatgaaaaagAGGGAATGTATTGCAATGAATGTGACAAGACGTTCTCATCTCAGACATGGTTCGAAAGTCACAAAATATTTCACGTAGAAATTAATGAAAAAGATTCATATAAATGTCGCCGATGTGAGGCTAAGTTTACTACGAACTATTATTTGATGCAGCACATGCAAGAATCTCACACCAAATACAAATGCAATGAGTGTGATGTAACGTTTCCCTACAAGCAAAATTTAGACGACCATAACCGACATTTGCATGTAACTGCAGAAGAGTTTCTTTGCAATGAATGCGGAAAAACGTTTACAAAGATAGCCAATCTTAAGACTCACGAATCTACGCATCAAATAGGAAAGGCAATAAACAGTTCAACTTTTTTGTTCAACTCGTTATCGTCTTCCAAAAGTTCCGGGGCTGTACCATTACAGACTCAACTACTGGTAACATACAAAACGTCTCCACCGGCACATAAAGTAATCGCGAAAGTTAAGATGGAATCAAATACTGTTGCATCTAGATCTCCACCTTCATTGAAAGTAATACCAACCAAACAACTAATGAATTATCCGACAACTGTGTCAAAGGTACCTCCAAACAAACCAGTAACAACTGAGAGTGAAGATGATTCGCCTACATATGTTTTTCCTTTCGACTATACTCCTTACGTAAGAAACACTTTACCGTCGATCTGTTTACGAAAAATAGCCAAAGTAATGGCTAGAGAAGAAGATTTAACGCAGAAGAAAGTGTTCGCTTGGATTTGTAAAATTTGCAAGGACAAATTCCATGAAAAAAAACTTCTTCTGGAGCACTACGAAATGCACAAGAATACCACAGATAAGCTAGATGACATCGACGAAAATAATGATGCATATAACATAAGCAGCAAAGACGTCACTTGTCCAATTTGTATGACGACGTACGGCACCACATCTTTATTTCAACAACATGTTGCTCATAAACACAAACCAAAAGACCATCATTGTTATACGTGTAAACTTACTTTTAATGACGATTTTTACTTGAGTCTACATAATACCAAACACAATAAAGATCCAGGATGGTACGAGTGCGTGATATGCAAGAAGTTTCAAACAAAAGACACCATGGCCTTAAACGAGCATATGACCAAAGAGCATGTAGAAGAGGAAATCTATTGCAACGAATGTGACAAGACGTTCACATCAAAGACGTGGTTCGAAGATCATAAGATATTCCACGTAGAAATGAATAAAAAAGATTCATATGAGTGTCGCAGATGCGAATCTACCTTCACCACCAACTATTACTTGATGGAACACATGCAAGAATCCCACACCAAATACAAATGCAATCAGTGTGATGTAACCTTCGCCTACAAGCAAAATTTAGATGTACATAACCGCCATTTGCATTTAACTGAACAAGAGTTTCTTTGTAATGAATGCGGTAAAACGTTTCCAAAAATATCTAGTCTTAGGCTTCACGAAACTTTGCATAAAAAAGGAAAGCATGCTTGTTCTGTTTGTGATAAAGTGTTCACAAAGAGAAATTACCTTAAAGACCATTTGCTGACTCACACGGGAGAAAAACCACACAAATGTGATTTCTGTGATAAATCTTTCTCCCAGAGGACCAGTGTTAAGATACATATGCGTATCCATACCGGGGAGAGACCATATCCTTGTTCCAAATGTAAGAAAGGGCATATTAGCAAAGCCGTAAAAGATGTTCATGAGAGAAGGACAATAAACACTTCAACTTTTTTGTTCAACTCGTTATCTTCTTCCAAGAGTTGCAGTCTTAAAAATGTTCAAGCCTCGTCCAATCGACTACTACGTGTCCAAGGAACATCCAAGTATTACATTATTTTACCAAAGAACTCTGTATCTGCGGCTGTGCCATCACAAACCCAAATGGTGACATCAAAAACGGCTCCACATGCACTTAAAGTAACACCATCACAAAACCAACTGTTGATGACAAAAAAGACTTCTCCACCGGTACTTAAAGTAATTTCGAAAGTTTTGATGGCATCAAATACTGTTGGATCTGGACCTACACCTCCAATGAAAGTAATCCCAACCAAAAATTTAATAAATCACCCGACAACTTTGTCAAATGTACATCCAAGCACTCAAGTCGTAATCCAGAGTGAACGTGTTTCGCCCATATATATTAACCCTTTCGATTATACTCCTTACGTAAAAAACACTTTGTCACCCATCTGTAGACTAAAAATATTCGATGCAGCTAAAGGTGAACGAAATTTAATGCAGGAAAAAGTATTCTTATTCGCTTGGACTTGTAAAATTTGCAGGAAAGAATTCCCCGAAAAAGAACATCTTCTGGAGCACTACGAAATGCATAAGAATACTACAGATCAGCTTGGTGATATCGACGAAAATAACGATACATATACCATAGGCAGCAAAGAAGTAACTTTGAATCCAATTTGTATGACGACGTATACCAATATAGCTCGTTATCAACAACATGTTGCTCAAAAACACAAACCAAAAGACCATTATTGTGATACGTGTAAACATACTTTTACTGACGATTTTTACTTGAGTATACATAAGTCCACGCACAATCAAGATCCAGGATTATACGAGTGCGTGATATGCAAAAAGTTTCAAACAAAAAACACCAAAACCTTATACGAGCATATATCCAAAGAGCATGTAAAAGAGGAAATGTATTGCAATGAATGTGACAAGACGTTCTTATCGAGGACGTGGTTCGAAGATCATAAAATATTTCACGAGGACATTAATAAAAGACATACGTATAAATGTCGCAAATGCGAATCTACATTCACATTCACGTCCAACTATTCGTTGATGGAACATATGCAGGAATCTCATATCAAATACAAATGCAATCAGTGTGATGTAACCTTTCCCTACAAGCAAAATTTAGACAAACATAACAGCCATCTGCATTTAACTGAAGGAAAGTTTATTTGTAATGAATGTGGGGAAGCATTTACAAAATTGTCCACTCTTAGGTTTCATGAAATAATCCATAAGGCAGGGAAGCATGTTTGTTCTGTCTGTGgtaaaatgtttaaaaagaaagtagCCTTGAACCTTCATATGAGAGGTCATACTGGGGAAAAACCGTACAGCTGCAATTTCTGCGATAAAGCTTTTGCTCAAAGGAACGTTTATTACACACATAGAAGAATTCATACAGGCGAGAGGCCATTTTCTTGCTCCGAATGTAAGAATTCTTTCACCGATAGATCGGCTCTTAGGCAACCTTAA
- Protein Sequence
- MSTRLLPIQGAPMYYIIVPNNHVSAAVSSQTPLLVKSKPSPPALKVIPKVVMASNTVGSRSSPSLKVIPTKELMNYPTSLSNLLPNQPIAFQSKGPVPKYYANPFDYTPYVKNTLSLTHTQKIAELEKRSQSERNLMQEKAFSWVCKICKKEFHEKELLLDHYEMHKNTTDELGDFDENNDAYNISSKEITCPICMTPYTSISNYQSHVSHKHKPKDHYCETCKYNFTDDYYLSLHNAIHNEDPELYECVVCKKFKTKISRTLYEHIIKEHEKEGMYCNECDKTFSSQTWFESHKIFHVEINEKDSYKCRRCEAKFTTNYYLMQHMQESHTKYKCNECDVTFPYKQNLDDHNRHLHVTAEEFLCNECGKTFTKIANLKTHESTHQIGKAINSSTFLFNSLSSSKSSGAVPLQTQLLVTYKTSPPAHKVIAKVKMESNTVASRSPPSLKVIPTKQLMNYPTTVSKVPPNKPVTTESEDDSPTYVFPFDYTPYVRNTLPSICLRKIAKVMAREEDLTQKKVFAWICKICKDKFHEKKLLLEHYEMHKNTTDKLDDIDENNDAYNISSKDVTCPICMTTYGTTSLFQQHVAHKHKPKDHHCYTCKLTFNDDFYLSLHNTKHNKDPGWYECVICKKFQTKDTMALNEHMTKEHVEEEIYCNECDKTFTSKTWFEDHKIFHVEMNKKDSYECRRCESTFTTNYYLMEHMQESHTKYKCNQCDVTFAYKQNLDVHNRHLHLTEQEFLCNECGKTFPKISSLRLHETLHKKGKHACSVCDKVFTKRNYLKDHLLTHTGEKPHKCDFCDKSFSQRTSVKIHMRIHTGERPYPCSKCKKGHISKAVKDVHERRTINTSTFLFNSLSSSKSCSLKNVQASSNRLLRVQGTSKYYIILPKNSVSAAVPSQTQMVTSKTAPHALKVTPSQNQLLMTKKTSPPVLKVISKVLMASNTVGSGPTPPMKVIPTKNLINHPTTLSNVHPSTQVVIQSERVSPIYINPFDYTPYVKNTLSPICRLKIFDAAKGERNLMQEKVFLFAWTCKICRKEFPEKEHLLEHYEMHKNTTDQLGDIDENNDTYTIGSKEVTLNPICMTTYTNIARYQQHVAQKHKPKDHYCDTCKHTFTDDFYLSIHKSTHNQDPGLYECVICKKFQTKNTKTLYEHISKEHVKEEMYCNECDKTFLSRTWFEDHKIFHEDINKRHTYKCRKCESTFTFTSNYSLMEHMQESHIKYKCNQCDVTFPYKQNLDKHNSHLHLTEGKFICNECGEAFTKLSTLRFHEIIHKAGKHVCSVCGKMFKKKVALNLHMRGHTGEKPYSCNFCDKAFAQRNVYYTHRRIHTGERPFSCSECKNSFTDRSALRQP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -