Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML015058.1:1039870-1067264[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.3e-06 0.0016 21.4 0.6 1 23 162 184 162 184 0.95

2 11 0.049 13 9.2 2.1 1 23 220 242 220 242 0.98

3 11 2.8e-05 0.0073 19.4 1.8 2 23 250 272 249 272 0.96

4 11 6.9e-06 0.0018 21.3 3.8 1 23 278 300 278 300 0.98

5 11 0.0002 0.053 16.7 3.5 1 23 306 328 306 328 0.97

6 11 4.4e-05 0.012 18.7 0.7 1 23 334 356 334 356 0.94

7 11 0.0012 0.32 14.2 0.4 3 23 364 384 362 384 0.96

8 11 6.1e-06 0.0016 21.4 2.9 1 23 390 412 390 412 0.98

9 11 0.00027 0.069 16.3 1.3 1 23 418 440 418 440 0.99

10 11 1.6e-07 4.3e-05 26.4 2.0 1 23 446 468 446 468 0.99

11 11 5.3e-07 0.00014 24.8 0.7 1 23 474 496 474 496 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.3e-06	0.0016	21.4	0.6	1	23	162	184	162	184	0.95
2	11	0.049	13	9.2	2.1	1	23	220	242	220	242	0.98
3	11	2.8e-05	0.0073	19.4	1.8	2	23	250	272	249	272	0.96
4	11	6.9e-06	0.0018	21.3	3.8	1	23	278	300	278	300	0.98
5	11	0.0002	0.053	16.7	3.5	1	23	306	328	306	328	0.97
6	11	4.4e-05	0.012	18.7	0.7	1	23	334	356	334	356	0.94
7	11	0.0012	0.32	14.2	0.4	3	23	364	384	362	384	0.96
8	11	6.1e-06	0.0016	21.4	2.9	1	23	390	412	390	412	0.98
9	11	0.00027	0.069	16.3	1.3	1	23	418	440	418	440	0.99
10	11	1.6e-07	4.3e-05	26.4	2.0	1	23	446	468	446	468	0.99
11	11	5.3e-07	0.00014	24.8	0.7	1	23	474	496	474	496	0.98

Sequence Information

Coding Sequence: atggaagaATGTGAACTTCGCAATATTTGTAGAGCGTGTCTTACTGAACAGGGGCAATTCCAGTCAGTTTTTGTTCCAGAACCCAGCTCAGGCACTGCCCTTCATATATCCGAGATGATGAGTGCCTGTGCTTCTGTCCAGGTAACTTTAGGAGATGGTTTACCTGAACAAATATGTAAGTCTTGTGCCACTGACACCGTCAATTTATATCTCTTTAAGCTAAAATGTGAAAAAAGTGATAAATCTCTACGAGAGAGATTAAAAAAGTCTTCTGAAATATACGATGGTGTTTTTATAAAGGCTGACGATGTCAGCGGTTTAGAAGATGATGTAAAATGTGAAGAACCAAGCAACAAAAATGAAATCGAAGAGAATTTGCAGCACTTTGATAATTTCTTCGATAAATATAGTGAATACAGTGATGAGGATTCCAACGATCCAAAAGAAGAAGAGGTTCCTAAAGACAAACCAAAAGTTAAAGAGTTCAATTGTGATATTTGCAACAAGCAGTTTAGTAGAAACGACTTACTTTTAAGGCACAGGATAGCACATGCTATGAAAATGGAAGACCAGAAGATGGAATTCGACACTAGCTACCCCATCGAAGATGATGACGACGATGACATCATCGATATAAAAAGAGAAACAGACTTCGTTTATTCGTGTAATCGCTGCGAAACGATTTTTTTACACAAAGAAGACCTAGACAGCCATTTAAAATCTCATCTTAAAGAAGAGTATAACGTCAGCTGTGAGATATGCCAGAAAAAGTTTTCTAAGCTGGCTCATATGAATAGGCATTTGAGATCGGCGCATTTTATGGACAAACAATTTAAATGTGAGTTTTGTGAGAAGAGTTTCCATAGACAAGAACAGCTTAGGAACCACATGAACGGGCATTCTGGTCTCAAACCACATATCTGTGATATATGCTGTAAAGGCTTTAACCAAATTTCAAATTTGAGGGACCACATGCGTACTCATAATGGCGAAAAGCCTTTTTTGTGTTCCACGTGTGGCAAAGGCTTTAATCAACTGGGAAATTTACGACAACACACAGTGAGACATAGCGGAATTAAAGCTCATTTGTGTAGTACATGTGGAAGTGGTTTCGCCAGTAAAGGAGAATTGGGTGCACATCTTAGAAAACATACTGGTGCCAGGCCGTTTGTATGTCAGGTGTGCAATCACGGCTTTACCACGTCGAGTTCACTCACGAAACACAAACGAATTCATTCTGGCGAGAAACCATACGAATGTGATACCTGTAAAATGAAATTTTCAAGATCTGGTATACTGGCTAGGCATAAAAggactcacactggagaaaagccttataaatGCAAGTTTTGTGACAAGGCTTTCTCACAGTCTAACGACCTCACCTCCCACCAAAGAATCCACACCGGCGAAAAGCCGTTCATATGCGACGAATGCGGCCAAGCGTTTAGACAAAGTTCGGCGTTGAAGACGCACAAAAAAACTCACGTTGAGAAGAATCCATCAGCAGTGCCTTCTACTTTGGAAAAAATCGACAAAGCTGCATGCGTCGTTGAAGCCAAACCGATATTCCTAACGGGGATTTTAAATACGGAGTTTTTGCCGGGTTTTTAG
Protein Sequence: MEECELRNICRACLTEQGQFQSVFVPEPSSGTALHISEMMSACASVQVTLGDGLPEQICKSCATDTVNLYLFKLKCEKSDKSLRERLKKSSEIYDGVFIKADDVSGLEDDVKCEEPSNKNEIEENLQHFDNFFDKYSEYSDEDSNDPKEEEVPKDKPKVKEFNCDICNKQFSRNDLLLRHRIAHAMKMEDQKMEFDTSYPIEDDDDDDIIDIKRETDFVYSCNRCETIFLHKEDLDSHLKSHLKEEYNVSCEICQKKFSKLAHMNRHLRSAHFMDKQFKCEFCEKSFHRQEQLRNHMNGHSGLKPHICDICCKGFNQISNLRDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTVRHSGIKAHLCSTCGSGFASKGELGAHLRKHTGARPFVCQVCNHGFTTSSSLTKHKRIHSGEKPYECDTCKMKFSRSGILARHKRTHTGEKPYKCKFCDKAFSQSNDLTSHQRIHTGEKPFICDECGQAFRQSSALKTHKKTHVEKNPSAVPSTLEKIDKAACVVEAKPIFLTGILNTEFLPGF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00026279;
90% Identity: -
80% Identity: -