g379.t2
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML014984.1:2758907-2765557[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0087 2.3 11.5 0.2 2 20 183 201 182 203 0.92 2 17 1.2 3.2e+02 4.8 0.2 3 23 247 266 246 266 0.95 3 17 4.6 1.2e+03 3.0 0.1 3 23 282 301 281 301 0.89 4 17 1e-05 0.0027 20.7 1.4 1 21 307 327 307 328 0.95 5 17 0.0011 0.28 14.4 2.5 1 23 334 355 334 355 0.98 6 17 0.014 3.7 10.9 4.4 2 20 362 380 361 382 0.94 7 17 3e-05 0.0077 19.3 5.4 1 23 389 411 389 411 0.99 8 17 3e-05 0.0078 19.3 1.1 1 23 417 439 417 439 0.98 9 17 1.9e-06 0.00049 23.1 2.0 1 23 445 467 445 467 0.97 10 17 0.0081 2.1 11.6 6.0 2 23 474 495 473 495 0.91 11 17 0.011 2.8 11.2 4.0 1 23 501 523 501 523 0.98 12 17 0.00019 0.049 16.8 1.7 1 23 529 551 529 551 0.94 13 17 0.001 0.27 14.4 0.3 1 23 557 579 557 579 0.95 14 17 0.0046 1.2 12.4 0.6 1 23 590 613 590 613 0.97 15 17 0.00076 0.2 14.9 0.4 1 23 619 642 619 642 0.96 16 17 3.3e-07 8.6e-05 25.4 3.2 1 23 647 670 647 670 0.98 17 17 0.039 10 9.5 0.7 1 21 682 702 682 703 0.94
Sequence Information
- Coding Sequence
- ATGGAAAGTGAACAATGTAATATGTTAAATGAAAATGTTCAACAAGAAACTAACATTCTTGTTAGTTCAATTAAATTAGAAGTGAAAGCCGAACCACCTGACAGTTCAGATTTGTGGGACTCTTTAGATCCTCCCACTGTGGAGCCTGAGTATGTACATGTACACTTTTTAAACCAAGAAACAAATCAAGATTTTATGAAACACAAGCAATGCAATGGGGATATTGTCATCAAAAGTGAACCAAATTTATTCTTTGATAACCAATCTGTGGACGAAGGAAAACTAGAACTACAAAAGGTGAAAGAAGAATTGCCTAGTGAGGAATATGATAAACTTACAAATTTTGAAGAAGTTATGTTAACTGAGGAATGTAATCTTCCAATTAAATCTGAGGCTGACTTAGAAGAAAAAACCTCCAGTAATTATCACCCTCGAGCTGTATCAAATCAAAAGCAAGAGAAGTTTTTTTATGCTTCAATAAAAGAGTatattaacaaaacaaaaaatgataGAAGGAAGAAACTTAAAAATGCAAAGTCCATTATCACATGTCCATATTGTGGCAAATGGTATTATAGGAAAAACGAGTTACTGAAACACTTTCTAAGTTATCGTGTAAAGAAAAGTGTGTTTGTTAAAAGATTTATGCACAAAAATgacaatattttaaccaatatGAAAGATGGAAACTCCAACAACAAGCCTGCAACGGAAAAGAAAGTATCATCAAAAGTGGCATGTAAACTGTGCTCTAAACTTGTAGACAAATATTATATGAAGGCACACATATTAGTTCATAACAACAAGCCTGCAACGGAAAAGAAAGTATCATCAAAAGTGGCATGTAAACTGTGCGCTAAACTTGTAGACAAATATTATATGAAGGCACACATAttagttcacactggagaaaagagGTTTCAATGCGATATTTGCTTGAAGAAATTCAGTCAAAAATCAAATCTGAACATGCACAAGCGTTCATGTCGCAGCACGGCATATCAATGCGAAATATGCTTTAAGACGTTTCAATCTAATTCCATAAAAAACCATATGTATACTCACTTAGAAGAAACACCTATGAAATGTACTTTTTGCTTTAAAACCTTTAGGAGAACCGACAACTTTGAGGCCCACAAATGTTTCGATTTTGAGGAAAAGGTATTTAAATGTCATTTATGTTCAAAATCTTTTAAACGAAAGTTTGTTTTAACTGCACACATGTACACACATACAGGAGGACGGAAATACCATTGTCCACTCTGTCCAAAAGTATTCAGACAACAGTCAACAAAAAATGACCACATACTCATTCACATGGGAGAAAAGCAATTCAAATGTAACATTTGCCCGAAGAGTTTTGTTAATAAAAACCTGTTACGAAGACACAAACTTTACCACTCGGACATCAAACAGCACAGTTGTATAGTTTGTTCCAAAAGTTTTAAAACGAAAATGTGTTTAAGGCGGCATATGAGCCTGCACAACAACACAACCAAATTTCAATGTAACATTTGCTTAAGAGAATTCAAGAAGAAGAATTCATTGCAGTGTCACATGTCCATCCATACCGGTAACTACAAATTCAAATGTGGATATTGTGATAGATCTTTTTCACGGAAACAACCACTTCTTACACACGAGTATAACCACACTAATAAAAAACCGTATCCATGTGACATGTGTCCAGAAGCTTTCTTTTCAAGTACAGCTTTAAAGAACCACAAAATTTTTCATGCTGCTAGTGATGGTAAAGACGACAAACCATTTAAGTGCGATATATGCATTAGAGAGTTCAAATTGATTTCATCGTTAAAGAATCACATAAAAAACGACCACACAGGCAACAAACCCTTCAAATGCGAAGAATGTCTCATACAGTTTGCCACGCAAGATTCCCTAGACAAACACATTGACAAATTTCATACGAAAAAGCAGTTTGAGTGCAAAATATGTGGGAGAAGTTTCTCCCATAGGAGCACTATGAATAAACATATCAGGGTCAAACATAATCCTGATGGAAAAGCTCCTGTCGAAAAAAAGTTCGAATGTGAATTTTGTAGTAAGAAATTCGTGTTTGAAGGTAGCATGAAGTATCACGTGAAAATGCTTACATGTATGAAGTAA
- Protein Sequence
- MESEQCNMLNENVQQETNILVSSIKLEVKAEPPDSSDLWDSLDPPTVEPEYVHVHFLNQETNQDFMKHKQCNGDIVIKSEPNLFFDNQSVDEGKLELQKVKEELPSEEYDKLTNFEEVMLTEECNLPIKSEADLEEKTSSNYHPRAVSNQKQEKFFYASIKEYINKTKNDRRKKLKNAKSIITCPYCGKWYYRKNELLKHFLSYRVKKSVFVKRFMHKNDNILTNMKDGNSNNKPATEKKVSSKVACKLCSKLVDKYYMKAHILVHNNKPATEKKVSSKVACKLCAKLVDKYYMKAHILVHTGEKRFQCDICLKKFSQKSNLNMHKRSCRSTAYQCEICFKTFQSNSIKNHMYTHLEETPMKCTFCFKTFRRTDNFEAHKCFDFEEKVFKCHLCSKSFKRKFVLTAHMYTHTGGRKYHCPLCPKVFRQQSTKNDHILIHMGEKQFKCNICPKSFVNKNLLRRHKLYHSDIKQHSCIVCSKSFKTKMCLRRHMSLHNNTTKFQCNICLREFKKKNSLQCHMSIHTGNYKFKCGYCDRSFSRKQPLLTHEYNHTNKKPYPCDMCPEAFFSSTALKNHKIFHAASDGKDDKPFKCDICIREFKLISSLKNHIKNDHTGNKPFKCEECLIQFATQDSLDKHIDKFHTKKQFECKICGRSFSHRSTMNKHIRVKHNPDGKAPVEKKFECEFCSKKFVFEGSMKYHVKMLTCMK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -