g14086.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- ken
- Assembly
- GCA_003013835.2
- Location
- ML015102.1:1199454-1214265[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.5 9.1e+02 3.3 0.5 3 23 192 211 191 211 0.85 2 19 0.00069 0.18 15.0 3.3 1 23 214 236 214 236 0.95 3 19 0.21 55 7.2 2.0 1 23 267 289 267 289 0.98 4 19 0.098 26 8.2 0.6 1 23 295 317 295 317 0.91 5 19 5.9e-05 0.015 18.3 0.8 1 23 323 346 323 346 0.95 6 19 3.8e-05 0.0099 19.0 1.4 1 23 357 380 357 381 0.96 7 19 1.4e-05 0.0037 20.3 0.2 2 23 389 410 388 410 0.97 8 19 0.023 6.1 10.2 5.2 1 23 416 438 416 438 0.96 9 19 0.012 3.2 11.1 1.1 2 23 538 560 537 560 0.94 10 19 0.0007 0.18 15.0 0.5 1 23 584 606 584 606 0.99 11 19 0.28 72 6.8 0.1 1 23 610 632 610 632 0.97 12 19 0.0081 2.1 11.6 0.8 1 23 638 661 638 661 0.96 13 19 0.00061 0.16 15.2 4.3 1 23 667 689 667 689 0.97 14 19 0.081 21 8.5 0.4 1 23 695 718 695 718 0.93 15 19 0.00011 0.027 17.6 1.4 2 23 730 752 729 752 0.96 16 19 0.0001 0.027 17.6 2.0 3 23 766 786 764 786 0.96 17 19 5.2e-05 0.014 18.5 0.9 1 23 792 814 792 814 0.98 18 19 1.6e-05 0.0042 20.1 0.5 1 23 820 842 820 842 0.98 19 19 0.00015 0.038 17.1 0.9 1 22 848 869 848 869 0.97
Sequence Information
- Coding Sequence
- ATGGTGTGGTGTCTATGCTATGTTACTGCAGCATCGCCGGCGATATTGGGGGCTCCAGGTTCAGGGAGTCCTCCCACGAGGAACGGTTTAGAATCAGATACAGAAGAAATTATAATAGTTGTATACGACGATTATGAAACTAGTACGAACGAAGATAATAATTGGTCGTGTATAGACGATATACCTTTACCAAcgaatattgaaaaaatacttgATGATCCCGAAGTTTTATTCATAAATTTTGATGGTGACAATCTAGAAGACGATGATGATCAAAACCTAATCAAATGGGAGGATGACAGTCCAGAAGTACTTCAAGAGGAATCTGTTGACTGTAAACGGGAAGAACAGAAGGAATGTGAAGAGACCATAGAAGAAGGACTTCAAGAGGAATCTGTTGACTGTAAACAGGAAGAACAGGAGGAATGTGAAGAGGCCATAGAAGACTATAAGGAATTTGAGGAAGAAGGCGACTTTGACCAGCCGGAACATATTTATATCGATGGAGGTCTCCTATATGTAGAACCAATTTATAAATCAGAACGAACAAGTTCTGCTTCTGAACTGGCTCTGTGTAGTGTTTGTGGCAAACGCGTCAAAATCAGAAGTATGTCCAAACACATGGCCTTCCATGGAAAACACAGTTGTGATATTTGCTCAAAATCGTTCAAAACTTTCGAAGAATTTGAAAAACACAAACTGGAACATTTGGAAAATGATCATGCTTGTACCAGATGTAACATGAAGTTCAATGATACTCTAGAATATGTCTACCATTGCTATAAACACGACCATGTGTATAGTTGTGTGATATGTTCGTTTACAACTCATAACAAGTCTTCTATTAAGGGTCATATTCTGCGCCACGAAAAGAAATACACTCATTACTGCGACATTTGTGGAAAAGGGTTTTTGGGCAAGACCTTGCTAGATTCCCACAAAGAAGTTCATCTGGATATCAAGAGGTACAGCTGTAGTATATGCGACAAAAAATTCGCCGTGAAGAGATACCTTCAATCACACGTAAACCTTAACCATCGGAAAGAGCTCTACGGAGACGACCAGCTCTTCCAATGTGAGGTTTGCGGAAGAGAGTTTACTTTCTTGAAGAGTCTTCTTCGTCACCAAAGCATCATCCATCACATAGGCGAAGATCGTACCGTGGAGTGCCCTGTCTGTCACAAGATGATTGCTAACGCTTATAATCTTAAGATGCACATGAGGATTCATACAGGGGAGAAAAATTTCTGTTGTGATCTTTGCGGGAAAGCTTTTTCGGCCCATAAGTACTGGAAGAAGCATAAGCAGCTCCACGAGATGCAGAGTTCGAAAGATCCAGGCGATATTGAAAAGATCGAGGATTTGGTGGATTTCGGTGCTCTTTCAGATATGGATGATTTGGAAATCGATCATGCTGACTTTATCATGGACATTGAACAgatagtaaactatataaaaactgaGCTAGCCGACGACTGGGCAGCACCGACAAGGAAGAGGAAAGCGAAGAAGGTGTTAAAATCAAAATCCACTGCAAAATCAAAAAGAGTGAAGAAGGATCCACCCAAGTATGTTCCAAAGCAGAAGCCGAATCATAAAGCTCGTGCCTGGGTCTGCAAGATCTGTTTCGAAGAGTTCGACACCAGAAAAAACATGTTCGACCATAGGAAGTTGTTCCACGAAGACATGGAGGAGAAGTTTAGTAAAGAAGACGACGAAAAGTATTCTTACGACCCAATACTCGAATGCTACACTTGCAACAACTGTTCGGCGGAGTTTCAGACGAAGGAGGAAGTGACGAAGCATATTGAAACTCACGAAGAGACTTACGATTGTCTTGAGTGTCAAATAAGTATTTCAGGTGCCTTGAACTTCTCCGCCCATATGCAGCAACATAGGACAGACAGGTTCTTTCCTTGTCCGATGTGCACCCACACTGCGAGTAGAAAGTCTGCGATGCTGACCCATATAACTCGCATGCATTTTAGGAAATACGACTTCCAATGTCGCACATGCGGCAAATGCTTCAACGATGCAACTACTTTTAAAGAACACGAGAATTACCACTTGGGGGTGAAACCTTTCTCGTGCATAGTCTGCAGTAGGGAGTTCATATACTCTCGGTACCTTGTGGCGCATCAAATCCGTAATCATAGAGTGAGGGTTCTGGATAAAGACTCCAAGACTCAATGTCACATGTGCCCTAAAATGTACGCTAGAAGTGAGACCTTGGTTAAGCACGTGCTAACCAAGCATCTTACCTTTCACGAAGGTCCACACGAGAAGAAGCATTTGTGTGACGTGTGCGGTCAAGGCTTCTCCAGAACAGACAAGCTGAAGATACATTACCGCAAGCATACAGGAGAGAAACCATATTCCTGCGTGTACTGCAGCAAGAGCTTTATTAAGAAAGATTATCTAATCATGCACGAAAGAATACATAATGGTGAAAAGCCGTATGTTTGTGATCATTGCGGAAGGTCGTTTAATCAAGGAGCTCCTTTGAGGATTCACTTGAGATCGCATACGGGCGAGAGGCCCTATAAGTGCCCTCATTGTAGCACCGGGTGCGTTTCGAAGGGATCGCTTAACGCGCATATTAGAAGCTGCTTGAATTCCGCAATGTAA
- Protein Sequence
- MVWCLCYVTAASPAILGAPGSGSPPTRNGLESDTEEIIIVVYDDYETSTNEDNNWSCIDDIPLPTNIEKILDDPEVLFINFDGDNLEDDDDQNLIKWEDDSPEVLQEESVDCKREEQKECEETIEEGLQEESVDCKQEEQEECEEAIEDYKEFEEEGDFDQPEHIYIDGGLLYVEPIYKSERTSSASELALCSVCGKRVKIRSMSKHMAFHGKHSCDICSKSFKTFEEFEKHKLEHLENDHACTRCNMKFNDTLEYVYHCYKHDHVYSCVICSFTTHNKSSIKGHILRHEKKYTHYCDICGKGFLGKTLLDSHKEVHLDIKRYSCSICDKKFAVKRYLQSHVNLNHRKELYGDDQLFQCEVCGREFTFLKSLLRHQSIIHHIGEDRTVECPVCHKMIANAYNLKMHMRIHTGEKNFCCDLCGKAFSAHKYWKKHKQLHEMQSSKDPGDIEKIEDLVDFGALSDMDDLEIDHADFIMDIEQIVNYIKTELADDWAAPTRKRKAKKVLKSKSTAKSKRVKKDPPKYVPKQKPNHKARAWVCKICFEEFDTRKNMFDHRKLFHEDMEEKFSKEDDEKYSYDPILECYTCNNCSAEFQTKEEVTKHIETHEETYDCLECQISISGALNFSAHMQQHRTDRFFPCPMCTHTASRKSAMLTHITRMHFRKYDFQCRTCGKCFNDATTFKEHENYHLGVKPFSCIVCSREFIYSRYLVAHQIRNHRVRVLDKDSKTQCHMCPKMYARSETLVKHVLTKHLTFHEGPHEKKHLCDVCGQGFSRTDKLKIHYRKHTGEKPYSCVYCSKSFIKKDYLIMHERIHNGEKPYVCDHCGRSFNQGAPLRIHLRSHTGERPYKCPHCSTGCVSKGSLNAHIRSCLNSAM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -