Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML015316.1:135631-178845[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00048 0.12 15.5 0.5 1 23 158 180 158 180 0.95

2 12 3.2 8.2e+02 3.5 1.3 3 23 186 207 184 207 0.90

3 12 6.8e-06 0.0018 21.3 1.0 1 23 213 235 213 235 0.99

4 12 0.00043 0.11 15.6 2.2 3 23 243 263 241 263 0.95

5 12 0.00022 0.056 16.6 1.5 2 23 270 291 269 291 0.95

6 12 9.6e-06 0.0025 20.8 2.4 1 23 297 319 297 319 0.99

7 12 2.9e-05 0.0076 19.3 1.0 1 23 325 347 325 347 0.99

8 12 0.00014 0.038 17.1 1.3 1 23 353 375 353 375 0.97

9 12 1.4e-07 3.6e-05 26.6 2.2 1 23 381 403 381 403 0.98

10 12 6.7e-07 0.00017 24.5 0.5 1 23 409 431 409 431 0.98

11 12 1.3e-05 0.0035 20.4 0.2 1 23 437 459 437 459 0.98

12 12 3.4e-05 0.0088 19.1 0.3 1 23 465 487 465 487 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00048	0.12	15.5	0.5	1	23	158	180	158	180	0.95
2	12	3.2	8.2e+02	3.5	1.3	3	23	186	207	184	207	0.90
3	12	6.8e-06	0.0018	21.3	1.0	1	23	213	235	213	235	0.99
4	12	0.00043	0.11	15.6	2.2	3	23	243	263	241	263	0.95
5	12	0.00022	0.056	16.6	1.5	2	23	270	291	269	291	0.95
6	12	9.6e-06	0.0025	20.8	2.4	1	23	297	319	297	319	0.99
7	12	2.9e-05	0.0076	19.3	1.0	1	23	325	347	325	347	0.99
8	12	0.00014	0.038	17.1	1.3	1	23	353	375	353	375	0.97
9	12	1.4e-07	3.6e-05	26.6	2.2	1	23	381	403	381	403	0.98
10	12	6.7e-07	0.00017	24.5	0.5	1	23	409	431	409	431	0.98
11	12	1.3e-05	0.0035	20.4	0.2	1	23	437	459	437	459	0.98
12	12	3.4e-05	0.0088	19.1	0.3	1	23	465	487	465	487	0.96

Sequence Information

Coding Sequence: ATGTTAAAATCgtatatatattattttcagGTCCAGGAAAATGATGGTTTGCCATATTTAATCTGCAACAATTGTTGTTACACTTTAAATGTagcaattaattttaaaactcAGTGCTTGAAGTCTGATAGTCATTTAAAAGCGGTATTATTCCCTGTTGAATCAACAATTATATATAAATCTATTACCATATTGGACAACAATAACTCCAATGATCTTTGCCTGGAGATTTATGACGACCAAGATGTCCCTAATACAAATAATGTTGAGGTTGCAGCAGATAATAGAATACAAATTGTGAAGAACTTTGATGATATCAATAATATAAGAAATGTATCACAAAATATTGACACAGAAGTGGCGAATCCTGCAGTATTGGACAATATGGCAAGCATTAACAATCAATCAGTTATAAAATTTTATCCAAAAGCAAAAACAAAAGAAGCTAGTCAAAGAAATAAGTCTAAATTGTTTCTATGTGAAAtttgtaataaagaatttatatttgAAACCACTTTAAGGTCACATTTAGTGACTCATGGTAAAAAAATAGCTTGTGAAGTTTGCCATCAACAGTTTAACGTAATGAAAATTTACAAGTCTCATATGACATCCAAACATCCAGATTATCGTCCATATAAGTGCGCCCACTGTAGCAAAGATTTCGCTGCCTCTGACACTTTAATTAAACATATGAGAATACATGGAGGGGAACGAAAACATCTTTGTACTGTATGTGGCAAAAGATTTTACGAGCCAAACCATTTACTGATACATTCAAGAgttcatactggtgaaaaaccattgaGCTGTATGACTTGTGGGAAAAGGTTTACAAATCGGCACGGATTAGTGGCTCATAATAAAGTACATACAGGGGAGAGGAAGTATCAATGCAACACATGCGGTAAAAGATTTGCTCACTCGTTTGTTCTGACAGCGCATAAGAGagtacatactggagaaaaaccgtataAATGCAGTACGTGCAAAGCTTCATTCGGATCTTCGTCGTATTTAAAGATACACGAAAGGATTCATACGCAGGAAATGCCATACAAATGTGAGACCTGCTCAAAGTCATTTATAAGCAAAACTCGACTATTGTCTCATCAGGTTATTCACAGTAAAGAAAAATCACATCAGTGTTCTATTTGTGGAAAAACCTTCAGTAGATCTAGAGACATGCAAGTTCACATACGATCCCACACAGgTGAAAAGCCTTACGCTTGCGACCAATGCGACAAACGCTACATCACTTCCAGTAACTTAGCCGCCCATAAACGAACGCATCTAGGTATCAAAAACTACATTTGTTCTACGTGCGGTAAAGCGTTTGGGGACCCCAGAACGTTGAAGGGTCACTATAGAATACACACCGGAGAAAAACCGTATCTTTGTAATATTTGCGGAAACAGCTATTCGCAGTCTGGGCAATTATCCGTACATAAAAGAGTTCATGAAAACAAGCATAACGAGGTCGTTGTTAATCTGGAAAAAGATGTGGTGTGGTATAATGTGTTCGAGTCCGCTAGAAGCTAG
Protein Sequence: MLKSYIYYFQVQENDGLPYLICNNCCYTLNVAINFKTQCLKSDSHLKAVLFPVESTIIYKSITILDNNNSNDLCLEIYDDQDVPNTNNVEVAADNRIQIVKNFDDINNIRNVSQNIDTEVANPAVLDNMASINNQSVIKFYPKAKTKEASQRNKSKLFLCEICNKEFIFETTLRSHLVTHGKKIACEVCHQQFNVMKIYKSHMTSKHPDYRPYKCAHCSKDFAASDTLIKHMRIHGGERKHLCTVCGKRFYEPNHLLIHSRVHTGEKPLSCMTCGKRFTNRHGLVAHNKVHTGERKYQCNTCGKRFAHSFVLTAHKRVHTGEKPYKCSTCKASFGSSSYLKIHERIHTQEMPYKCETCSKSFISKTRLLSHQVIHSKEKSHQCSICGKTFSRSRDMQVHIRSHTGEKPYACDQCDKRYITSSNLAAHKRTHLGIKNYICSTCGKAFGDPRTLKGHYRIHTGEKPYLCNICGNSYSQSGQLSVHKRVHENKHNEVVVNLEKDVVWYNVFESARS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -