g5091.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015013.1:542903-558885[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00048 0.12 15.5 1.5 2 23 51 72 50 72 0.96 2 17 0.15 40 7.6 3.4 1 23 76 98 76 98 0.98 3 17 0.00038 0.098 15.8 0.5 1 23 104 126 104 126 0.99 4 17 1.5e-05 0.0039 20.2 0.2 1 23 132 154 132 154 0.94 5 17 5.6e-05 0.014 18.4 0.6 1 23 160 183 160 183 0.97 6 17 0.0033 0.85 12.9 0.5 1 23 189 211 189 211 0.96 7 17 0.0052 1.4 12.2 0.4 2 23 218 239 217 239 0.97 8 17 2.7 6.9e+02 3.7 0.8 2 23 247 268 247 268 0.82 9 17 0.0042 1.1 12.5 0.4 2 23 272 293 272 293 0.97 10 17 1.5e-06 0.00038 23.4 0.5 1 23 302 324 302 324 0.98 11 17 1.6e-05 0.0042 20.1 4.5 1 23 331 353 331 353 0.99 12 17 2.7e-05 0.0069 19.4 0.3 1 20 359 378 359 381 0.92 13 17 0.00019 0.05 16.7 2.3 1 23 387 409 387 409 0.97 14 17 4.2e-05 0.011 18.8 1.5 1 23 415 437 415 438 0.93 15 17 0.09 23 8.3 1.6 2 19 444 461 443 461 0.96 16 17 0.13 33 7.9 4.1 2 23 475 496 475 496 0.97 17 17 0.0016 0.4 13.9 0.7 1 23 502 524 502 524 0.98
Sequence Information
- Coding Sequence
- ATGGATTCAGACCTACTTCCCCTAGAAGAAATTAGAATAAAGGAAGAACCAGATTACTTTGATCCAAGTATAGACTGGAATGAAAACAATCCTTGTGATACTCTTATAAAGGTTGAATTATTGGAAACCGACGGTAGTTCTAAAAATTGGGTGTGTAAAGAATGTAATTGTGTATTTATAAACGAGCATGAATTAAACATACACAAAATGATACATTCTTCAGACCATACTTGTTTTATATGCAAAGAATTTGTCAGAAACAGATTCCAGTTTGTGGGTCATGTTAGAAAGCATATGTGTGCGAAGCCTTTTAAATGCCCTAGCTGTGTTAGGTCGTTCCCTAGCCCTAGGGAAACCAAACTACATCAAAGGGTGCATAGTGATGATAGACCCTTTATGTGTACGGAATGTGGCAAAGCTTTCAAACAGATTTCTACCTTGAAAGATCATGAAGTGGTGCATACGGGAGAGAAGAAATTTAAGTGTAAGATCTGCGAAGGAGCATTTGCAACAGCAACAAGTTTACGAAGGCACATCCATGTGATGCATGAAACAGTCCGTTCCTATCCCTGCAGATATTGTAGAGAAAGTTTTACTAGTCAACAAGCCCGAGAGCAACACACAGCAATACACAAAGACATCGATCCATTGAAGTGCACTACTTGTGGAGAGAAATTAGCTGATTTGGAAGAGTTCACGCTACATAGGAATAAGCATTTAGATGTGAAGGCTTCTGGCACTTGCGAATATTGTGGAAATAAGACGTTTTATTTTGGTTTGAAGGAGCATATTGAAAAAACTCATCAGCCTAGGTCCTGTGAAATCTGCAGTTTGATCTTCTACGACGAAAAATCCATGGAGAACCACCAAAAGAGTCATTTGGAGGAAGCAGTCAAGGAAGGTTACGCGTGTCAGGAATGCGGAAAGATATTCGAGTTCCCTCGATACCTAAAAGCCCACATGAAACGTCACGAACAGGACTACAAGAAGTATAAATGCGATCTCTGTCAGAAGTTCTTCTGTTCGAAAAGAGACCTCCAAAATCACCTCAACGTTCATGCGAACATCAAAAACTTCGCCTGTGAAATTTGCAATAAGCCCTTCAGGACGAAGGAGAGCGTTAGGAAGCATATGCCTATACACTCGGAAAAACGACCCTTCGAGTGCCCCCTGTGTGATAAACGATTCAAGAAACAGTCCATTCTTCGAAAACACTCCTTCACCCACTCAAAAGTCCGTCAATTCGCGTGTGATCTGTGCGACAAAACCTACAAAACCAAGGAATCCTTGAGGGTACACAAGATAGCTCATCACCAAAGAAGAACGAAAAAATGTAAAGTTTGTAAAAAGATGTTCCAGTTCGAGTCTATGTATAAACAGCACGATTGCGTCACTAGGTATCGGTTTGACATTTGTAAACGAAGGTGTAACGTCTGTAAACGATTTTGTAGGACTGTTACGACGTACGTGCGTCatctaaaaggacatttaagggAACGGTTGTTCCAGTGTAACATTTGCAAGGAACCTGTACGAAACCAGTACCAAGTTAAGCTGCATAAGATTAGACATAGGAACGAGAAAAAAGTGTAA
- Protein Sequence
- MDSDLLPLEEIRIKEEPDYFDPSIDWNENNPCDTLIKVELLETDGSSKNWVCKECNCVFINEHELNIHKMIHSSDHTCFICKEFVRNRFQFVGHVRKHMCAKPFKCPSCVRSFPSPRETKLHQRVHSDDRPFMCTECGKAFKQISTLKDHEVVHTGEKKFKCKICEGAFATATSLRRHIHVMHETVRSYPCRYCRESFTSQQAREQHTAIHKDIDPLKCTTCGEKLADLEEFTLHRNKHLDVKASGTCEYCGNKTFYFGLKEHIEKTHQPRSCEICSLIFYDEKSMENHQKSHLEEAVKEGYACQECGKIFEFPRYLKAHMKRHEQDYKKYKCDLCQKFFCSKRDLQNHLNVHANIKNFACEICNKPFRTKESVRKHMPIHSEKRPFECPLCDKRFKKQSILRKHSFTHSKVRQFACDLCDKTYKTKESLRVHKIAHHQRRTKKCKVCKKMFQFESMYKQHDCVTRYRFDICKRRCNVCKRFCRTVTTYVRHLKGHLRERLFQCNICKEPVRNQYQVKLHKIRHRNEKKV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -