Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML015297.1:405902-437136[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.3e-06 0.0016 21.4 1.9 2 23 138 159 137 159 0.96

2 11 4.6e-08 1.2e-05 28.1 1.9 1 23 165 187 165 187 0.99

3 11 6e-05 0.016 18.3 0.7 1 23 193 216 193 216 0.98

4 11 6e-06 0.0016 21.5 2.1 3 23 300 320 298 320 0.97

5 11 7.3e-05 0.019 18.1 0.4 1 23 326 348 326 348 0.98

6 11 2.8e-06 0.00074 22.5 3.9 1 21 354 374 354 376 0.96

7 11 0.00014 0.036 17.2 4.0 3 21 385 403 383 404 0.93

8 11 0.0026 0.69 13.2 0.9 3 23 422 442 420 442 0.97

9 11 9.3e-06 0.0024 20.9 2.1 1 23 448 470 448 470 0.98

10 11 1.9e-05 0.0049 19.9 2.9 1 23 476 498 476 498 0.98

11 11 1e-07 2.7e-05 27.0 3.9 1 23 504 526 504 526 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.3e-06	0.0016	21.4	1.9	2	23	138	159	137	159	0.96
2	11	4.6e-08	1.2e-05	28.1	1.9	1	23	165	187	165	187	0.99
3	11	6e-05	0.016	18.3	0.7	1	23	193	216	193	216	0.98
4	11	6e-06	0.0016	21.5	2.1	3	23	300	320	298	320	0.97
5	11	7.3e-05	0.019	18.1	0.4	1	23	326	348	326	348	0.98
6	11	2.8e-06	0.00074	22.5	3.9	1	21	354	374	354	376	0.96
7	11	0.00014	0.036	17.2	4.0	3	21	385	403	383	404	0.93
8	11	0.0026	0.69	13.2	0.9	3	23	422	442	420	442	0.97
9	11	9.3e-06	0.0024	20.9	2.1	1	23	448	470	448	470	0.98
10	11	1.9e-05	0.0049	19.9	2.9	1	23	476	498	476	498	0.98
11	11	1e-07	2.7e-05	27.0	3.9	1	23	504	526	504	526	0.99

Sequence Information

Coding Sequence: ATGGATACAAGAGAAATCCCGAAAAATACGGATATAGCCACTCTTTGTCGGGCTTGTTTGGCTTCAGAAGATGTAAAGGAAGAATTAAAGTCTTCTTTATATGATATATACAAACAATTAACTGAATTAAAGTTTGAAAAAGAAGATAAGTTCCCCCAGTTTGTCTGTCTGCAATGTTCGAACAAACTCCAAGACATCTCTAGCTTTATACAGACCTGTAGAAGTAGTGTACAATATTTAGAAAAATGGTTAACAACTAAAGAACAAGAAAGTGATGATGATTACTTTCCTGATGATAATAAATATGATGATAGTGAGGATGACGACAATGAAGATGATGAATTTCAacCAACAAAATCGAGGAAATCAATAAAAAATGGCAATTCAAGTAAATCGAGAGTAGAAAATTGTAGCTGTGAAACATGCGGTAAAAAATTTTCAAGGTATGGGGCACTGGGGAGGCACATGAAAATACATCTGGGAATCAAGCCCTACGAGTGCAAAGGATGTGATAAGAAGTTTACCCAGAAATCAACACTCGATAGGCATATGTTAACACACACAGGTGAAAAACCCTTCCAGTGCAATCTATGTGGTAAATTATTTGTCAGAAAGAATCAAATAGTTCAACACATCAAAAAAGTCCATCCGAAAGTAACAACAAAAGAGCATTCTTCTATAATAACTGAGCGGGATAAAATGATCTATTTCGACGATAATCAAACGGCAGCTGAGCCTGTAGTGGTAACACCGGTAGTACCAGGTGTCAAAGATGAGCTTGAAGTTACAATTGAAGAAAATGAGCCAAAGAAGGAAGTGGCAGTGTCTGCGGAGCCACAGGAAGAGGTGACAATAGATGTTCCTAAAGTCAAGAAGAAAAGGATGGAACTCTGTTTATGCAATTTGTGCGGTAAAGAGTTTAAGAGAAGAGAATATTTAAGAAACCATATGGCAATCCATGATAACATAAAACCGTACACATGTCAAATTTGTGGATCAGGATTTACACAAAGACAAGCTTTAAGCAGACACAAACTAGTTCATACAAAGGAAAGACCATACCAATGTAATCTTTGTGGCAAAACGTTTACCCGAAAAGAAAAACTAACGGACCATATTCGATGTCATGAAGAAGGTGTTGATCCGCATCTGTGTTTCCATTGCGGACGAAGATTCAAAGACAGGGAGTACCTAAGAAAACACTTACGTTACTACCTGATGGGAGACAAAGGACGGTGGAAGAAGGAAGCCAAAAAATGCCTTTGTCCAGAATGCGGTAAAGAGGTTCATTCGGAAGCATACCTCAAGGTTCATCTTTTGAGCCATACTGGAGAGAAACCATTTAGCTGCAATTTATGTGATAAAAAATTCACTGTTAACGCCACGTTGCAACATCATCTAAACATACACAAGGGTGTCAAGCCATTCGAATGCACACAATGTACTAAAGCCTTCAGAACAAACCATTCGTTGAAGATCCACGAGATGATGCACGCCGGGGAACGACCGTATAAATGCAGCACCTGTGACAAAGGATTCGTGAGAAGGAGCCATTTAAAGAGGCATATAAGACTTCATTGA
Protein Sequence: MDTREIPKNTDIATLCRACLASEDVKEELKSSLYDIYKQLTELKFEKEDKFPQFVCLQCSNKLQDISSFIQTCRSSVQYLEKWLTTKEQESDDDYFPDDNKYDDSEDDDNEDDEFQPTKSRKSIKNGNSSKSRVENCSCETCGKKFSRYGALGRHMKIHLGIKPYECKGCDKKFTQKSTLDRHMLTHTGEKPFQCNLCGKLFVRKNQIVQHIKKVHPKVTTKEHSSIITERDKMIYFDDNQTAAEPVVVTPVVPGVKDELEVTIEENEPKKEVAVSAEPQEEVTIDVPKVKKKRMELCLCNLCGKEFKRREYLRNHMAIHDNIKPYTCQICGSGFTQRQALSRHKLVHTKERPYQCNLCGKTFTRKEKLTDHIRCHEEGVDPHLCFHCGRRFKDREYLRKHLRYYLMGDKGRWKKEAKKCLCPECGKEVHSEAYLKVHLLSHTGEKPFSCNLCDKKFTVNATLQHHLNIHKGVKPFECTQCTKAFRTNHSLKIHEMMHAGERPYKCSTCDKGFVRRSHLKRHIRLH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -