g99807.t1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diabrotica virgifera
Gene Symbol
-
Assembly
GCA_003013835.2
Location
ML021764.1:5778-27261[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.78 2e+02 5.4 2.8 1 23 271 294 271 294 0.92
2 16 0.12 32 7.9 7.8 1 23 412 434 412 434 0.96
3 16 0.00032 0.083 16.1 4.2 1 23 439 462 439 462 0.97
4 16 4.9e-06 0.0013 21.7 1.9 1 23 468 490 468 490 0.99
5 16 1.4e-05 0.0036 20.3 0.8 1 23 496 518 496 518 0.98
6 16 4.9e-06 0.0013 21.7 1.9 1 23 526 548 526 548 0.99
7 16 1.4e-05 0.0036 20.3 0.8 1 23 554 576 554 576 0.98
8 16 4.9e-06 0.0013 21.7 1.9 1 23 584 606 584 606 0.99
9 16 2.3e-05 0.0059 19.7 1.1 1 23 612 634 612 634 0.98
10 16 0.0023 0.61 13.3 3.2 2 23 641 662 641 662 0.97
11 16 6.2e-05 0.016 18.3 2.9 1 23 668 690 668 690 0.98
12 16 0.0065 1.7 11.9 3.0 1 23 696 718 696 718 0.96
13 16 1.3e-06 0.00033 23.6 1.4 1 23 724 746 724 746 0.97
14 16 8.3e-05 0.022 17.9 3.6 1 23 752 775 752 775 0.95
15 16 2.4e-05 0.0063 19.6 0.7 1 23 784 807 784 807 0.97
16 16 1.4 3.6e+02 4.6 0.6 1 10 813 822 813 823 0.93

Sequence Information

Coding Sequence
ATGGCATTTCTACACAAACTAGGAGAATTCCTAAACTTTTCAGAGGAACAGTGTAAGTCAAAAAGTGAAAGTGATAAAATATGTTCCTTTTATGCTatgaaaaaagtgaaaattaagatTGAGGAAGATGCGGAAATTTCCTATCGCCACTTAGCCCAACTTACACCCGTAAAAGTTGAGGATTGTAAAATAGAACTATCAGAAACAGAGAATACTGATAGAGTTAAGTCTAATTCTTCTGTGATGCCCCCAGAGGATACTAGCCTTGAAATTAAGCAAGAGTATAAAGAGTTTGATCCTGATCTGGATAATATTGCATCTACTGATCCCATTAATAGTTATTCAACCAATACTACTAGGGAGAGTATTTATAAATTTAAGTCCAATGCTCCTCAAACTCTTCCACAAGATATTAAAGTTGCAATTAAACAAGAACGTGAAGATTGTGATTTTTTTGTGGATAAAATGCGACTTACTCACATTAACAATAGTTATTCAACTAATTATTTAAGCGAGAATATTGGTATACCCAAGTCTGGTGCTTCTCAAATTGCTCCACAAGGTATTAAAGTTGAAATTAAACAAGAACATGAAGAGTCTGAATTTGTTCTGGATTCAGCTAGCAACAGACATAATACTCATCTAAATTCAGAAGTAAAATTGGAAGACTTTGTTAAACTGGAAATTAATTCTAATTTAAggaaaagaaaaatcaaagcaGTTAATAGAAGGAAGAAATTAACGGATTATTCTACTTTCACCAAAAAATggCTTTCTTGGCTAACCTCAACAAGGAACAAAAACAAAATTCATAGTTGTTCCTTCTGTGGCAAAACATGCATAAAACCTTTAATACTTATATCTCATTATAAAGTAAGTCATTTTGCAAAAAAGGTAATACGAACTAAGCAAACTAAAATCAAGTCATCTTCCATGTTACATGATTTAGTGAAAAAGAAAAATGATGAAAGATCGTCATATGAAGACCACTATACATTTGATGAAAGTAAAAAGGAATATGTACGCTGTACGTTGTGTCCAAAAAAAGCAAAGTCCCATTTTAGCTTTCACACTGACCAAAAGTTATTTGAATGTACCACGATGCAAAAAAAACTTAATAAATCCGGTAACTTGACCACACATGTGCCTGTGGAATCTACGAAAAATCCATATACTTGTAAAGTTGGTTTAGAACAACTTTCTAAAAATCGCTATTTACTAGGACAGAAAAGTTATAAATGTCATGTTTGCTCGAAAGAATTCACCCAAATTGATCATTTCAGATGTCATCAACTAGAACATTCTGTGAAGCCTTTTGAATGCGAACTCTGTGGAAAGAAGTTCAAGAAGGAGTATCAAATGACTCATCACCATATGGTTGTCCACTTTGGTATCAGACCTTATAAGTGTGACTTGTGCCCTAAAATATGTGTTCGGTCTGACGACTTGAAGAAACACCGAAGGGTGCATAATGGGGACAAACCACACAAATGCACGATTTGTCCGCAGGAGTTTGTACGGAAATGGGGGCTGAGAATCCATATGCTTCGTCACACGGGAGACAAGCTCAGACCTTATAAGTGTGACTTGTGCCCTAAAATATGTGTTCGGTCTGACGACTTGAAGAAACACCGAAGGGTGCATAATGGGGACAAACCACACAAATGCACGATTTGTCCGCAGGAGTTTGTACGGAAATGGGGGCTGAGAATCCATATGCTTCGTCACACGGGAGACAAGCTCAGACCTTATAAGTGTGACTTGTGCCCTAAAATATGTGTTCGGTCTGACGACTTGAAGAAACACCGAAGGGTGCATAATGGGGACAAACCACACAAATGCACGATTTGTCCGCAGGAGTTTGTACGGAAATGGGGGCTGAGAATGCATATGCTTCGTCACACGGGAGACAAGCCTGCCAAGTGCAAGGTTTGTTCAAAAGAGTTTAAACACGTATACCGTCTTAACCAACATATGTATGTCCACTCTAAAGAAAAGCCTTTCAAATGTAATATTTGCTCAAAAGAGTTCAAACACAATTATAGTCTTAAACCACACATGTTGGTCCACACTGCAGAAAAACCTTTTGAATGTGAGATCTGCCTCAAGAAACTTTGTTCTAGAAGCAGTTTACGCCAACATAAGCTTCTCCATTCCAAAGAAAAACGTTTTGAATGCAGTATATGTTCGAAAAAGTTTGCCAGGTCAAGTAATTTAAAACAGCATTTGTTTGTGCATTCAGACAACAAGCGCTTCCAATGTGAAATTTGCCAAAAGAAGTTCACAGAAAAGCGTGGTTTGACTAGGCACatttcacaATGTCATCAACTAGAACATTCTGTGAAACCTTTTGAATGTGAACTTTGTGGAAAGAACTTCAAGAAGGAGTATCAAATGACACAACACCAAATGGTTGTCCACTTTCGTATCAGACCTTATAAGTGTGACTTGTGCCCTAAGACATATGTGCTCGGTCTGACGACTTAA
Protein Sequence
MAFLHKLGEFLNFSEEQCKSKSESDKICSFYAMKKVKIKIEEDAEISYRHLAQLTPVKVEDCKIELSETENTDRVKSNSSVMPPEDTSLEIKQEYKEFDPDLDNIASTDPINSYSTNTTRESIYKFKSNAPQTLPQDIKVAIKQEREDCDFFVDKMRLTHINNSYSTNYLSENIGIPKSGASQIAPQGIKVEIKQEHEESEFVLDSASNRHNTHLNSEVKLEDFVKLEINSNLRKRKIKAVNRRKKLTDYSTFTKKWLSWLTSTRNKNKIHSCSFCGKTCIKPLILISHYKVSHFAKKVIRTKQTKIKSSSMLHDLVKKKNDERSSYEDHYTFDESKKEYVRCTLCPKKAKSHFSFHTDQKLFECTTMQKKLNKSGNLTTHVPVESTKNPYTCKVGLEQLSKNRYLLGQKSYKCHVCSKEFTQIDHFRCHQLEHSVKPFECELCGKKFKKEYQMTHHHMVVHFGIRPYKCDLCPKICVRSDDLKKHRRVHNGDKPHKCTICPQEFVRKWGLRIHMLRHTGDKLRPYKCDLCPKICVRSDDLKKHRRVHNGDKPHKCTICPQEFVRKWGLRIHMLRHTGDKLRPYKCDLCPKICVRSDDLKKHRRVHNGDKPHKCTICPQEFVRKWGLRMHMLRHTGDKPAKCKVCSKEFKHVYRLNQHMYVHSKEKPFKCNICSKEFKHNYSLKPHMLVHTAEKPFECEICLKKLCSRSSLRQHKLLHSKEKRFECSICSKKFARSSNLKQHLFVHSDNKRFQCEICQKKFTEKRGLTRHISQCHQLEHSVKPFECELCGKNFKKEYQMTQHQMVVHFRIRPYKCDLCPKTYVLGLTT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-