g20587.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015196.1:516452-561251[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0028 0.72 13.1 0.6 2 23 230 252 230 252 0.96 2 20 0.014 3.6 10.9 1.3 1 21 356 376 356 377 0.95 3 20 0.15 40 7.6 5.5 1 23 406 429 406 429 0.92 4 20 0.019 4.9 10.5 0.7 1 23 462 485 462 485 0.94 5 20 0.00014 0.036 17.2 1.4 2 23 557 578 557 578 0.97 6 20 0.27 71 6.8 0.1 1 15 611 624 611 633 0.75 7 20 0.0033 0.86 12.8 0.8 2 23 637 658 636 658 0.96 8 20 0.001 0.27 14.4 0.2 1 21 696 716 696 720 0.90 9 20 0.0078 2 11.7 0.4 2 23 765 787 764 787 0.96 10 20 0.0015 0.38 14.0 1.4 2 23 801 822 800 822 0.97 11 20 0.0043 1.1 12.5 8.3 1 21 849 869 849 871 0.94 12 20 0.0023 0.59 13.4 1.0 2 23 887 908 887 909 0.93 13 20 0.0068 1.8 11.9 0.3 1 23 926 948 926 948 0.97 14 20 0.0059 1.5 12.0 0.3 3 23 961 982 960 982 0.97 15 20 1.7e-05 0.0044 20.1 0.1 1 23 999 1021 999 1021 0.95 16 20 6.6 1.7e+03 2.5 0.1 1 23 1061 1084 1061 1084 0.92 17 20 0.00026 0.068 16.3 2.2 2 23 1095 1116 1095 1116 0.97 18 20 0.00026 0.067 16.3 0.3 1 23 1148 1171 1148 1171 0.96 19 20 7.7e-06 0.002 21.1 1.6 1 23 1179 1201 1179 1201 0.99 20 20 0.0016 0.42 13.8 0.2 1 23 1218 1241 1218 1241 0.97
Sequence Information
- Coding Sequence
- ATGAGTTTGATAAAAAGTTCCCGTGGTCGAGATATATTAGTGGTGAAGCAACACTCCTTCTCGAAACAGAAAGTGTTAAAAAGCGGTGAGATATTTTGGCGCTGCATCCAAAGAAACGCTAAGTGTTCCGCAAAAGTATTTACAATAGGCTGTGATGACCTCACCATCACACGAAGTGACTTGGTACATAATCATGAAGCCGACCCAAAAAAGCTTGAAATAAAGATGGTAACCAATGCATGTAAAAGACAAGCCGAAGAGGACGTATCAGAAAAGCCTGCCGAAATTATAAGAGCTAGTGTTGCTAAGTGTGATGCCAATTTGCTGACAATCCCTGACATAGCTAGCATAAGGAAGAACATTTACAACTGTCGTCGTAAACTGTTACCAAGAAGCATATCAGAAGTACATAACGTGAGCTTGCAAATTAAAGAAGAACCAGCAGACCACACTGAACAGAACGAACACGATAACCCAAATATGCTAGATATGGGTCAAATGAATCACCACCAACTTGATCAACCAAATGACATGATACCAGGTCATGTGATGGTAAAGTCGGAACCAGTTGATATGGACGGACTGGACGAAGTTTATAGCGAGTTTCCTCCACAATTATCTCCTCAACAGGTGGAAACTGATGATTTGAATCAACCCTTAGTTGTTAGTGTTCCTGCTAATAATAGAACGTGTGGCGTGTGTGGCAAACTGTTTAGTAGCGCAGGAAATAAGAGAAAGCATGAAAAGATGCAGCATGGTCTTCATAATAACATTTCTGTTGTTACGCCTATTACAAGTGACGCTTTGACGAACGGAGAGGTACACCAAGAACCCAATTCGGATCAACAAAAGATTCTCTTCGCCATGGGATTAAAACTGTTACAGACCAGCGCGACCCCCATTTCTTCAGAAGAGCTATCCAAAATCGAGATAAGCTACATCGAAAAATGCAAGGCCATGGTTAACATGCACAAGTCTTTAACTTGCGCTTGTCACAACGTACCACATCAGAATCTTAAGGGGTTGTTGTCCCACTTGAGGGCTTTGAGAATATGGTTCCCAGTTTTCACTTGTTACAACTGTATGATTACGTTTACTGATAGATCTACATTTACAAGACATATTTCAAGATGTCAAAGCTCCCCACTCGACTCCATTACGAAGCTTAGCAATCTCAAACACCGTAGCGAAGTCAAAACCAGACTGTACCAAAACTTCAAATGCACCATCTGCAAGTTCATGTTCAGTTTTCACGAAGATTTTTGCACCCACGTTGACCTGGACCATTCCATGTTACAGTTCCCTGTACACTGCCCATGTGGAAGGATTTTCGAGAATATGGAAGACTACAAGGACCATGTTTACGTCAGTTGTCTTGTGGACTTCTACTGCGACATTTGTTTTGTTACTACTAAGACGCTGGATGATTTCCAGAAGCATGCGAAGGAGGTGCACGACGATTCTGAAGGATTTATATTGCTGCAGGACGACAACTATAAAGTTCGAAAGCCTTCCATGCACGTCAGTCCCAGTGTTATAGACGAGGGAGTCATTTTAACAGGCAAACGAGAACGCAAGTCATCCTACCGCTTCGTAGAAGATGAATTGGACGAAGTCATTCCACTTGACTCCAATACGAATTTGTACACTCCAAGAACCAACAACAGAAGCTGTCCGATCTGTACCAAAGAATATTCTTCGTACAAGAACATGATGCGACACTACAAAACCCACAGACCTGAAGAGATCGAGGAGCATAGACAGCAACAACAATTCGACTACGATTCACAAGATATGCAAGACATGGATTTGGAGGATGAAGAATCGATGTATTCGTGCCCCGACTGCGGCGGAATGTTTAAGTCTTTAGAGTGGAAGATACATTTGACAGAGCAGCATCAGCAGAAACCTTGTGGGGAATGCGGCAAGTTTTTCCAATTCCAGACGGAACTTGATCAACATCGAACCACTCATTTGAACTTGAAGATATCCAGGGACTCGAAAACACAATCATACACGAGTACTATGATAAGTCCTGGAGGAGAAGATGACGTGGAAGGAGGAGAAGAACCGGGTGACCGAGTATTCGCTTGTGAAGTCTGCGAATTCGTGTTCAGTACACAAGATGAATTAATGAACCACAAGCTTGAACAAGACCACGGCGAACTAGAGCCTATGGATAACGTGGACGGTATGGAAAACATGGACGATAACATGGACTTAGAAGTAATGGAACCATTGCAAACTATGGAAATTTTAGAACCACAGATCGAAACTACTTCAAAGAAATCTAAGTGCGATGTTTGCGATCAGGAGTTTAATAACTACAACGGCCTGTGGGAACACAACAGAAGCAAACATCCAGAAAGAAAAACACCACACGTGGATACATACCCTAAAAAATGTAAGGAGTGCGACAAGGTGTGTACTACTGGAGCTGCTTACTACAGACACATTCAAATCCATTCTAAAGTACCAGCAGATGCTGGTGCCAATAAGATGACTTTATTGAAACCAAAGAAAGAAATTGAGGAAGAATCCTATCATACATGTAAGAGATGCTTTAAAGTATTTTCCAGCAAATATAACTTGAAGAACCACTTAAAATGCCATGGAATTAATATTAATCCTGTTGCGAAGAAGATGGTGAGGAAGGCAGTATGCAGAGTGTGCCAACAAGTGTTCGAAACCAATGAAGAGTTGATTAGACACAAACAAGACCATCATAACTCGGTCGAAACTCCATATGATAATGGGGATAGATCCAGTTTGGTCTTCCCTTGCGATGTTTGCGTGATGACATTTGGAAGCAAGATTGCTCTGAAGAAACACAAAGACAAGCATATTCTCGAGTCAAAACCACCCTCTCGATCAGTATTCTGCAAATACTGCAAAATTCCATTTGATACCTATGCAGCTCTCTCCCTGCACATGTCGAGAGAACACGATGAAAGAGGTAAGAAGCAAATAAAAGAAGTTTACAAACCTGAAGAGTACAGTTGTACTATTTGCGGTAAATCATTCCAATCTGCTGGAGCTCTAACAACCCACATCGGCTGGCACAAACGTGCCCAAAACGACGGAACTGGCAAGTTACTGAAGCACGTTCCACCAGCTAAACCTAAATTGCTTAAAGTGCAACCGATTCAAATTAAAGAGGAACCTTCTGATGAGCCAAGGCACCAGTGCAGTACATGCTTGGCAGAACTACCCAACGATACAGCTTTACAGGTTCACATTTTGGAGAAGCATAGAAGCGTCAGTGCCATTATGTTGATTCCCCGTTGCAATACATGCAACAAAGACTTTACGACACAAGATGAATACGAAACCCACAAAAGACTTCATGATTTCTTGGAACGCCAGAAACAGCACGAGCAGAAGATGCTAATACAACAACAAGATGGCCCTCAATCGAAGATGGCACCTAACAAACCAAAGTTTCCCTGTAAATACTGTAACGCCGCCTTCAGCAGGTCTGATACACTTGGTGGTCATATTAGACAGTACCATAAGGAGCACGTTCAGACTGAATTCAGATGCAACCAGTGCGACAGAGTATTCGAGAAGCAAAATTCCTTGACCATCCATTTAAAAACTCATGACAAGCAAAGAAGCTTCCCAAATCCAGCATCCCAAAGCAAACCAATGTTCTCTTGTTCTATTTGTAACATGGGCTTTGATCTACCGAAGGATCTGAGGACTCATACCATCACTGCCCATCCATTTTGA
- Protein Sequence
- MSLIKSSRGRDILVVKQHSFSKQKVLKSGEIFWRCIQRNAKCSAKVFTIGCDDLTITRSDLVHNHEADPKKLEIKMVTNACKRQAEEDVSEKPAEIIRASVAKCDANLLTIPDIASIRKNIYNCRRKLLPRSISEVHNVSLQIKEEPADHTEQNEHDNPNMLDMGQMNHHQLDQPNDMIPGHVMVKSEPVDMDGLDEVYSEFPPQLSPQQVETDDLNQPLVVSVPANNRTCGVCGKLFSSAGNKRKHEKMQHGLHNNISVVTPITSDALTNGEVHQEPNSDQQKILFAMGLKLLQTSATPISSEELSKIEISYIEKCKAMVNMHKSLTCACHNVPHQNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHISRCQSSPLDSITKLSNLKHRSEVKTRLYQNFKCTICKFMFSFHEDFCTHVDLDHSMLQFPVHCPCGRIFENMEDYKDHVYVSCLVDFYCDICFVTTKTLDDFQKHAKEVHDDSEGFILLQDDNYKVRKPSMHVSPSVIDEGVILTGKRERKSSYRFVEDELDEVIPLDSNTNLYTPRTNNRSCPICTKEYSSYKNMMRHYKTHRPEEIEEHRQQQQFDYDSQDMQDMDLEDEESMYSCPDCGGMFKSLEWKIHLTEQHQQKPCGECGKFFQFQTELDQHRTTHLNLKISRDSKTQSYTSTMISPGGEDDVEGGEEPGDRVFACEVCEFVFSTQDELMNHKLEQDHGELEPMDNVDGMENMDDNMDLEVMEPLQTMEILEPQIETTSKKSKCDVCDQEFNNYNGLWEHNRSKHPERKTPHVDTYPKKCKECDKVCTTGAAYYRHIQIHSKVPADAGANKMTLLKPKKEIEEESYHTCKRCFKVFSSKYNLKNHLKCHGININPVAKKMVRKAVCRVCQQVFETNEELIRHKQDHHNSVETPYDNGDRSSLVFPCDVCVMTFGSKIALKKHKDKHILESKPPSRSVFCKYCKIPFDTYAALSLHMSREHDERGKKQIKEVYKPEEYSCTICGKSFQSAGALTTHIGWHKRAQNDGTGKLLKHVPPAKPKLLKVQPIQIKEEPSDEPRHQCSTCLAELPNDTALQVHILEKHRSVSAIMLIPRCNTCNKDFTTQDEYETHKRLHDFLERQKQHEQKMLIQQQDGPQSKMAPNKPKFPCKYCNAAFSRSDTLGGHIRQYHKEHVQTEFRCNQCDRVFEKQNSLTIHLKTHDKQRSFPNPASQSKPMFSCSICNMGFDLPKDLRTHTITAHPF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -