g97661.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML021083.1:14028-35767[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1e-06 0.00026 23.9 0.6 1 23 104 127 104 127 0.97 2 12 2.6e-06 0.00067 22.6 0.4 1 23 133 155 133 155 0.99 3 12 4.7e-05 0.012 18.7 1.6 1 23 169 191 169 191 0.98 4 12 4.4e-05 0.012 18.7 6.0 2 23 200 221 199 221 0.96 5 12 0.012 3.1 11.1 1.9 1 23 227 249 227 249 0.99 6 12 1.2e-06 0.00031 23.7 2.3 1 23 255 278 255 278 0.97 7 12 2.5e-06 0.00064 22.7 0.4 2 23 288 309 287 309 0.97 8 12 0.0013 0.33 14.2 0.1 1 23 315 337 315 337 0.98 9 12 1.4e-05 0.0035 20.4 2.0 2 23 343 364 343 364 0.98 10 12 2.2e-06 0.00057 22.9 1.2 1 23 370 392 370 392 0.99 11 12 2.9e-07 7.6e-05 25.6 0.5 1 23 398 420 398 420 0.98 12 12 0.00034 0.087 16.0 4.9 1 23 426 448 426 448 0.97
Sequence Information
- Coding Sequence
- ATGGAGACAATTCAAGAAAAAGAAGTAACAATTAAGAAGGAACTTAAAAACGAAAATAATTCAGAAACAGATACTAAGCTCAAGCTCATTAAAAAGGAGGCAGAATTAACTAATGAGCACCATATTCAAGATGTGAATTCTAATGACATAAAGGAGCTAAACACAGAAATTAATCTTGAAAATATGAAATGTGAACAAAGTTCAAAGGAATACAGTGTGGCTTTTGAAGattctgAACAACAAACGCATTCTGAAGACAAACCGTTTAAGCTGAAAATTCATTTGCGGAGCGATACAGAAGAGAagccttataaatgtgaaatatgttCCAAAGAGTTCACGCTCAAAGGAAGTTTGAAAAGGCATATGTCCGTAGGTCATACTAAACAAAAACCGTTTAAATGTGATGTCTGTTCTAAAGAGCTTGCTACAAGAGGTAGTTTAACACGACATATGAGAGTTCATACTAAAGATACTGAAGAAAAACCCCATACACCCCAGCTTTATGAATGTGAATCATGTTTTAAAGTTTTTACTGCTCGTAGTAAACTAAATAGACACTTAACAACACATGATGAAGACAACGACAACCGtattaaatgtgaaatttgttcaaAAACTTTTAAACATCGCAGTCATTTTAAGACCCACCTTCTATTACATTCCGATGATAAACCTTTTAAATGTGAGTTTTGTTCTAAACAGTTTCTAGAAAATAATAGGCTGCAACTTCATATGCGGGTTCATACAGAAGAGAagccttataaatgtgaaatatgttTCAAAGAGTTCACACGTAAGGAAAGTTTGAGAAATCATATGTATAGAGAGCATACTGAACAAAAACCTTTTAACAATTTAACATGTGATATCTGTTCTAAAGAGCTTACTACACAAGCTAGTTTGACAcggcatatgagagtgcataatGGAGAAAAACCATTTCAGTGTGACCTTTGTGACGCTCAGTTTGCAAATAATTATGCTCTGGGTCTTCACAAGCGTGCACATTCAGGAGAACTTCCAAAATGTAATGTTTGccttaagcaatttagtgaaaatagtaaattaaaaatacacaTGAGAACGCATAATAAAGAGACATGTTTTCAATGTGAGGTGTGTTCAAAGTCATTTACGGAAAATAGGAAATTGTTAGAACACATGCGTATGCATACAGGTGAGAGACCTTTTAAATGTGAAATATGCTCAAAACAGTTTGCTCAAAATGGAAGTTTAACGAGACATATGTTGATTCATTCTGAAGAGAAACCTTTTAAATGTGACGTTTGTTCCCGTCAGTTTACAcagaaaattaatttagaaaaacaTTGTCGTAGACATACCGAAAGAAAATCTTCAGActga
- Protein Sequence
- METIQEKEVTIKKELKNENNSETDTKLKLIKKEAELTNEHHIQDVNSNDIKELNTEINLENMKCEQSSKEYSVAFEDSEQQTHSEDKPFKLKIHLRSDTEEKPYKCEICSKEFTLKGSLKRHMSVGHTKQKPFKCDVCSKELATRGSLTRHMRVHTKDTEEKPHTPQLYECESCFKVFTARSKLNRHLTTHDEDNDNRIKCEICSKTFKHRSHFKTHLLLHSDDKPFKCEFCSKQFLENNRLQLHMRVHTEEKPYKCEICFKEFTRKESLRNHMYREHTEQKPFNNLTCDICSKELTTQASLTRHMRVHNGEKPFQCDLCDAQFANNYALGLHKRAHSGELPKCNVCLKQFSENSKLKIHMRTHNKETCFQCEVCSKSFTENRKLLEHMRMHTGERPFKCEICSKQFAQNGSLTRHMLIHSEEKPFKCDVCSRQFTQKINLEKHCRRHTERKSSD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -