Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML014993.1:1782614-1809126[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.3e-06 0.0022 21.0 0.5 1 23 129 151 129 151 0.98

2 12 5.7e-05 0.015 18.4 0.9 1 23 157 179 157 179 0.98

3 12 1e-05 0.0026 20.8 3.2 1 23 185 207 185 207 0.98

4 12 0.00021 0.054 16.6 1.4 3 23 221 241 219 241 0.95

5 12 7e-05 0.018 18.1 0.2 2 23 248 269 247 269 0.97

6 12 3.6e-06 0.00094 22.2 0.9 1 23 275 297 275 297 0.99

7 12 1.3e-06 0.00034 23.6 0.5 1 23 303 325 303 325 0.98

8 12 2e-05 0.0051 19.9 0.2 1 23 331 353 331 353 0.98

9 12 2.5e-06 0.00064 22.7 3.2 1 23 359 381 359 381 0.98

10 12 8.7e-06 0.0023 21.0 0.6 1 23 387 409 387 409 0.97

11 12 1.3e-06 0.00033 23.6 0.4 1 23 415 437 415 437 0.96

12 12 7.2e-07 0.00019 24.4 1.7 1 23 443 465 443 465 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.3e-06	0.0022	21.0	0.5	1	23	129	151	129	151	0.98
2	12	5.7e-05	0.015	18.4	0.9	1	23	157	179	157	179	0.98
3	12	1e-05	0.0026	20.8	3.2	1	23	185	207	185	207	0.98
4	12	0.00021	0.054	16.6	1.4	3	23	221	241	219	241	0.95
5	12	7e-05	0.018	18.1	0.2	2	23	248	269	247	269	0.97
6	12	3.6e-06	0.00094	22.2	0.9	1	23	275	297	275	297	0.99
7	12	1.3e-06	0.00034	23.6	0.5	1	23	303	325	303	325	0.98
8	12	2e-05	0.0051	19.9	0.2	1	23	331	353	331	353	0.98
9	12	2.5e-06	0.00064	22.7	3.2	1	23	359	381	359	381	0.98
10	12	8.7e-06	0.0023	21.0	0.6	1	23	387	409	387	409	0.97
11	12	1.3e-06	0.00033	23.6	0.4	1	23	415	437	415	437	0.96
12	12	7.2e-07	0.00019	24.4	1.7	1	23	443	465	443	465	0.98

Sequence Information

Coding Sequence: ATGTGTGTGCAATGTGTCCTGCAATGTAGCAGAGCTTATACTTTCAAACAGCAGTGTGAGAAGTCAGATAATATTCTACGACAGTATCTATCTCCAGAATTTCAGaaacAACTGTCAGATACGCTTGCCGAGAAACAGAGGGAACAAGTTAAACAAGAATTACAAGAACAGCTACAGTTTTCTGAACATCTAGGTACTGTCATTATCGAGGAGGATATTCCAGAGTTCGTTACATATACTGATGATGATCAAGTAGTGGTGAAAGAGGGCTTATATACAATAGAAACCACAACAGTAACAGACGCAATCAGTGAAGAATTAAGCGAGGGTATTGTTTTACAGCTTGAAGAGAAACAACCAGAAGATACCggcaataaacaaaaatattcttgtaaaaaatgtgatctaTCATTTCCATTAAAAGTTGATCTTAAGGTTCACATGATGTCTCATCCAAAAGACCTCGACTTCGAATGCCACGTATGCGACAAAGCCTTTAGCGAAGCTAGAATCCTGAAACGACATCTAAAAATTCACTTAGAACAGAAACCACATCAGTGCGATCAGTGCGATATGTCATTCGCTGAGAGTTCAAACCTCACTAAGCATAAAAAGAAGCATACGGGAGAATTAAGGAACATTAAAGGGAAACCACATCTGTGTTCAGTCTGCGGCAGAGCGTTCAAATGGGCTTCTAGTTTGTCAAAACACATGAAATACCATACTGGACATAAATTGTTGTCGTGCGAATATTGTGGAAAACAGTATGTTGAGgcCAGAAGCTTGAAAATTCATGTTCGATCGCACACGGGAGAACGCCCGTACGTGTGTGAAGTTTGTGAAAAGGGCTTTACACAAATTTGCAATTTAGAAAAACATCTCAGGGTCCATACTGGGGAGAAGCCGTTCTCGTGCCCGATTTGTAATAAAAGGTTCACTCAATCTGGATATGTAGGAATTCATATGCGAACCCATACCGGCTCCCGTCCGTACGTCTGTGGTACTTGCGGAAGAGCATTTGCCGGTTCTAGTACACTGAATATCCACCAGCACGTCCATACGGGAGAGAAACCGTTCACTTGCACGGTTTGCAATAAGTCATTCAGTCGACACGAAACTTTGATTATTCACACTCGGTCACACACTGGCGAAAAACCACACGTTTGTGTGGTGTGCAATAAAGGATTCACCAGTTCTGGGTTGTTATCTGGCCATATGAGGACCCATACGGGAGAGAAACCCTATGCTTGTGTGGCCTGTgataaaaaGTTCGCAACTTCCAGTAGTTTAAAGGTGCACATGAGGTCCCATACTGGAGATAAACCGTTCACTTGTAAAATTTGCAATAAAAGATATTCGCAGAGTAGTTCTTTGCAGCAGCATCTAGCATCACATAAAAAAGCAGAACTTAAAGTGGAAACAGTCCATGTAACTCTGCCAGAATTAATGTAA
Protein Sequence: MCVQCVLQCSRAYTFKQQCEKSDNILRQYLSPEFQKQLSDTLAEKQREQVKQELQEQLQFSEHLGTVIIEEDIPEFVTYTDDDQVVVKEGLYTIETTTVTDAISEELSEGIVLQLEEKQPEDTGNKQKYSCKKCDLSFPLKVDLKVHMMSHPKDLDFECHVCDKAFSEARILKRHLKIHLEQKPHQCDQCDMSFAESSNLTKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCEYCGKQYVEARSLKIHVRSHTGERPYVCEVCEKGFTQICNLEKHLRVHTGEKPFSCPICNKRFTQSGYVGIHMRTHTGSRPYVCGTCGRAFAGSSTLNIHQHVHTGEKPFTCTVCNKSFSRHETLIIHTRSHTGEKPHVCVVCNKGFTSSGLLSGHMRTHTGEKPYACVACDKKFATSSSLKVHMRSHTGDKPFTCKICNKRYSQSSSLQQHLASHKKAELKVETVHVTLPELM*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912434;
90% Identity: -
80% Identity: -