Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML015065.1:138001-139782[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.72 1.9e+02 5.5 3.0 1 23 61 82 61 82 0.96

2 18 0.019 5 10.5 2.2 2 21 89 108 88 109 0.94

3 18 6.5e-05 0.017 18.2 1.4 2 23 117 138 116 138 0.97

4 18 0.0033 0.86 12.9 0.0 1 23 144 166 144 166 0.96

5 18 0.0018 0.46 13.7 6.7 1 23 172 194 172 194 0.98

6 18 0.0036 0.94 12.7 5.1 2 23 201 222 200 222 0.97

7 18 0.0024 0.61 13.3 1.0 2 20 229 247 228 250 0.93

8 18 1.1e-05 0.003 20.6 1.0 1 23 256 278 256 278 0.96

9 18 0.0051 1.3 12.3 3.3 1 23 284 306 284 306 0.97

10 18 0.00087 0.23 14.7 0.8 3 23 314 334 313 334 0.98

11 18 9.5e-06 0.0025 20.9 2.8 1 23 340 362 340 362 0.98

12 18 0.00013 0.033 17.3 3.2 1 23 368 390 368 390 0.96

13 18 0.002 0.53 13.5 7.7 1 23 396 418 396 418 0.97

14 18 2.9e-06 0.00074 22.5 3.0 2 23 425 446 424 446 0.97

15 18 1.8e-06 0.00047 23.1 0.9 1 23 472 494 472 494 0.98

16 18 7.3e-06 0.0019 21.2 5.5 1 23 500 522 500 522 0.98

17 18 2.2e-06 0.00057 22.8 1.7 1 23 528 550 528 550 0.98

18 18 4.3e-05 0.011 18.8 3.4 1 21 556 576 556 577 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.72	1.9e+02	5.5	3.0	1	23	61	82	61	82	0.96
2	18	0.019	5	10.5	2.2	2	21	89	108	88	109	0.94
3	18	6.5e-05	0.017	18.2	1.4	2	23	117	138	116	138	0.97
4	18	0.0033	0.86	12.9	0.0	1	23	144	166	144	166	0.96
5	18	0.0018	0.46	13.7	6.7	1	23	172	194	172	194	0.98
6	18	0.0036	0.94	12.7	5.1	2	23	201	222	200	222	0.97
7	18	0.0024	0.61	13.3	1.0	2	20	229	247	228	250	0.93
8	18	1.1e-05	0.003	20.6	1.0	1	23	256	278	256	278	0.96
9	18	0.0051	1.3	12.3	3.3	1	23	284	306	284	306	0.97
10	18	0.00087	0.23	14.7	0.8	3	23	314	334	313	334	0.98
11	18	9.5e-06	0.0025	20.9	2.8	1	23	340	362	340	362	0.98
12	18	0.00013	0.033	17.3	3.2	1	23	368	390	368	390	0.96
13	18	0.002	0.53	13.5	7.7	1	23	396	418	396	418	0.97
14	18	2.9e-06	0.00074	22.5	3.0	2	23	425	446	424	446	0.97
15	18	1.8e-06	0.00047	23.1	0.9	1	23	472	494	472	494	0.98
16	18	7.3e-06	0.0019	21.2	5.5	1	23	500	522	500	522	0.98
17	18	2.2e-06	0.00057	22.8	1.7	1	23	528	550	528	550	0.98
18	18	4.3e-05	0.011	18.8	3.4	1	21	556	576	556	577	0.95

Sequence Information

Coding Sequence: ATGTCGAAGCTTTTTTGTCACTTCTACATCTACCATTATATAAAGAAaaccaagaagaagaagacagtcaCAAGCGTCTCACAAACCGTGTCCCTTGAATCTCTGCGAAAGAAAAATAAAGAAGTGTTACTGGAATCTTATTACGAAAAGATCTACACGTTTGATAAAATTGAACGTTTATATAATTGTAATGTGTGCTTGAGGAAGTATGACAAATCCCACAGAAAGTCACATTTGATTTGGCATACGGAAGAATGCAGAGTCCAGTGTGAAGTGTGCTATAGAGGCTTCCATACCGAATCATACTTCAAAAGACACCTCTGTGAACCAACGAAAGAAAAAACTTTAAAGTGCGAATATTGTTTCAAGAAATATGTAACTAGCAAGCAGTTGGCTATTCATATGAGTaaacacactggagaaaaaccatataAATGTTCAATTTGTCCAATGCAGTATTCAGGAACATGGGCTCTGGAAGCGCATATGGGACTCCATACTggaaaaaaactgtttaaatgtAATGTATGCTTTAAACTCTTTACTCATAATTTTAGACTGAAGAGACATTTACGCCAGCACGCTGAAAATGGTCCTTCAACTTGTACGATATGTTTAAGACGATGTACGAGCAAAAGTAAAATGAAACAACACATGAAAGTACACAATATGCAAAATTCGGTCCAATGTGATGTATGTTTTAGGATTTTTGCTCGGAAGTGTGACTTGAATAAGCACTTACCGATACacacagaccataaacctttccAGTGTGACGTTTGCTCAAAGTCTTTTAGAAAAAAGGGTCAGCTGAAGATTCACGCTTACATACATCGCAAAGACAGACCTTTTTCATGTCAGCTATGCTCCAAACAATTCGTATTGAACTGTTTACTCAAGAAACATATGGATCTACATAATGTTGATAATCCACTGCTTTGTACATTATGTTCTCGAAGTTTTCTGACAGAAGATGCACTAAAACGCCATCAGCGCGtacataatggtgacaaacgTTACGAATGCGACGTATGTTTCAAGGTATTTACACAAAACTGTAACTTAACCAAACATACGCTTATACACACAGGCGAGAAACCCTTTAAATGTGGTATATGTTCCAGATCTTTTAAACAAAACTGTCAATTGCAGCAACATGCCTATGTTCACGGCGGAAAGAAACCTTTTTCTTGCTCGATTTGTTCTAAACAGTTCACCATGAAGTGTATGTTGAAGAAACATATGTGTTTGCACACCGGAGAAAATCTGTTAAAATGTGAAATATGCTCCAAGCAATTTTCATATAATTCTAGATTGAAAAAGCATATGAAGACGCACGGTGTGGTCTTAGATGTCAAACCCACTCCAGCTAAACCAGTACGCGAAAAAACTAAAGAATCAGATGATAAATCCTTCAGCTGCGATATTTGCACGAAATCTTTTAGAAAAAAGCCGCTTTTGCAGCAGCATATGCTCGTGCACAATGGGAAGAAACCTTTTTCGTGCACAATATGCTCAAAGAAGTTTACGTACAACTGTCAACTGAAGAATCACATGCGTGTGCACAGTGGGGAGAAGCCATTCAAATGCGACATTTGTTCTAAACAGTATACATCAAATGAGAATTTAAAAACGCATATGCTAAACCACACCGGTGAAACACCCTTTAAGTGCCACATTTGTCCCAATTCATTTAGAACAAATAGTCAAATGAAAAAACACATTTGTATAAAAAATGAAGAAACTGCAATATTAGACTCGGTGGAAACAAATAATTCTTAA
Protein Sequence: MSKLFCHFYIYHYIKKTKKKKTVTSVSQTVSLESLRKKNKEVLLESYYEKIYTFDKIERLYNCNVCLRKYDKSHRKSHLIWHTEECRVQCEVCYRGFHTESYFKRHLCEPTKEKTLKCEYCFKKYVTSKQLAIHMSKHTGEKPYKCSICPMQYSGTWALEAHMGLHTGKKLFKCNVCFKLFTHNFRLKRHLRQHAENGPSTCTICLRRCTSKSKMKQHMKVHNMQNSVQCDVCFRIFARKCDLNKHLPIHTDHKPFQCDVCSKSFRKKGQLKIHAYIHRKDRPFSCQLCSKQFVLNCLLKKHMDLHNVDNPLLCTLCSRSFLTEDALKRHQRVHNGDKRYECDVCFKVFTQNCNLTKHTLIHTGEKPFKCGICSRSFKQNCQLQQHAYVHGGKKPFSCSICSKQFTMKCMLKKHMCLHTGENLLKCEICSKQFSYNSRLKKHMKTHGVVLDVKPTPAKPVREKTKESDDKSFSCDICTKSFRKKPLLQQHMLVHNGKKPFSCTICSKKFTYNCQLKNHMRVHSGEKPFKCDICSKQYTSNENLKTHMLNHTGETPFKCHICPNSFRTNSQMKKHICIKNEETAILDSVETNNS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -