g29445.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015360.1:89733-95848[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.21 53 7.2 2.2 1 23 91 113 91 113 0.98 2 23 0.01 2.7 11.3 0.3 5 23 123 141 122 141 0.95 3 23 0.003 0.79 13.0 4.1 1 23 225 247 225 247 0.98 4 23 0.0015 0.39 13.9 3.2 2 23 267 288 266 288 0.97 5 23 7.4 1.9e+03 2.3 0.3 8 23 378 393 378 393 0.90 6 23 0.0011 0.27 14.4 0.9 1 23 399 421 399 421 0.97 7 23 0.0072 1.9 11.8 2.0 1 23 427 449 427 449 0.99 8 23 0.00083 0.21 14.7 0.3 2 23 456 477 455 477 0.95 9 23 1.3e-05 0.0033 20.5 3.0 1 23 483 505 483 505 0.99 10 23 0.0016 0.42 13.8 0.7 1 23 512 534 512 534 0.97 11 23 4.8e-05 0.013 18.6 2.5 1 23 540 562 540 562 0.99 12 23 0.00085 0.22 14.7 0.2 2 23 569 590 568 590 0.96 13 23 0.0011 0.28 14.4 2.9 1 23 596 619 596 619 0.94 14 23 0.0018 0.48 13.7 0.3 1 23 626 648 626 648 0.97 15 23 0.0072 1.9 11.8 2.0 1 23 654 676 654 676 0.99 16 23 0.00083 0.21 14.7 0.3 2 23 683 704 682 704 0.95 17 23 0.00027 0.069 16.3 5.1 2 23 711 732 710 732 0.96 18 23 0.0033 0.86 12.8 1.4 1 23 739 761 739 761 0.97 19 23 4.8e-05 0.013 18.6 2.5 1 23 767 789 767 789 0.99 20 23 0.00014 0.036 17.2 0.4 2 23 796 817 795 817 0.95 21 23 0.00033 0.087 16.0 2.7 1 23 823 845 823 845 0.94 22 23 0.00012 0.031 17.4 6.2 2 23 852 874 852 874 0.97 23 23 0.0046 1.2 12.4 2.0 1 23 880 902 880 902 0.98
Sequence Information
- Coding Sequence
- atggCTGTTTATGAAATACAACGAGAAACTGATAATAGAATGTCTGAAAACAGGCTGGCGATACCAGGCCTGCAAAGGATGAAGATTCCAtTCGACATTAACGAAGAGTTTGGGAAACATGACGAAAGATATGGTAAAAGCCAGCTGTCAACATCACTAAATCTTGAAAACATTAAGAATGAACCAGAAGGAGAATACTCAGATATTCCTTCTTCGGTTGTTCAGAAAGATGATATAGACAGTGATATGCTGCAACACCCAGCTGCAGCTTTTGAGTgtgatatttgtttaaaaaaaatcagcCAAAATTCCCAATGTCTTGTACATAGACAAACACATACAAAAGAGGAACCCTTCAGATATGATGTTTGCTTTAAGGACTTTAACGGAGAATCTACGTTAAAAAGACATATGAAATTGCACAGTGGCTCCAGTATTGTAACAGAAAGTAACCAATCTACCCAAAAAGAAGACCTCCATGGTGAAGATAAGACTTTACAACCTATAACGTCTAAAAACAGTTCAAATATATCCACAGATAATGATGAATTAACACATAGTACCCTTTTCAATATTGAAGAAAACCATATGCAACAAACCAAATTTGATAATCATCTTAAAGAAAAACCTAACCGACGTGCATTTGTGCATAATAAAGAAAAAGACAAACCATTTCAATGCAGAATTTGCTATAAGCATTTCTCAATAATAACCAATCTAACACGTCATATATTTAGGCACGCAGATTTAGCTAGATTTAAGAACCGCATACAAAAACGCACTGGAGAACAACAATTAAGGTGTCATATATGCTTTGTACAATTCACATTTAAAGATAGCCTAAGAAATCATTTACTTAGGCACGTCGGAGAAAAACCTTTTGAGTGTGATATTTGTTGTAaactgttttttcaaaataataattgtattgtACATAGGCGCACACATATAAACGGGAAACCTTTCGAAGAGAAAGCACTTGATAGTTGTTATTCCAATATGCCTACAGAAATTGATCAGTCAATGGAAAATATGCCTTTAAATGTCGAAGAAAAATCTTTCCAACATATTGCATTAGATCATTTTTCTAATGTTCCAAAAGTAGAATATTTTCAAAGCAATTTTTATCTCAAACAATTCCCACTACAACGAAATTTAGATCGTCATACACTGACGCACTTAGGAATAAAACCCTTTAAATGCATTATATGTTTAAAGACATTTTCTTCACAAAACACATTGACAGACCATGAGCGCATACATTCTGGAGAAAAACCCTATAAATGTGAATTGTGTGAAAAGGAAATTAGATCGAAGTATATCTTCAAGAAACATATGAGATTGCACACCGGGGAAAACCTTATAAAGTGTGATTATTGTCCCAAACAGTTTACAGCTAAGACTCAATTTGAGGCACACGTAGTAAGCCACACTGGAGAAAGACCTTTTCAGTGTGTTGTTTGTTTCAAGAACTTCACAACCAAAGCAAGCCTGGCTAGACATATGCATACCCACACTGGAGGTAACCGTCCCTTTAAATGcattatatgtttaaaaatattttctacaaaaaacTCACTAACAGACCATGAGCGCATACATTCTGGAGAAAAACCCTATAAATGTGAATTGTGCCAAAGGGAATTTAGATCAAAGAATCCCTTCAACAAACATATGAGACTCCACACAGGCGAAAAACTTATAAAGTGTGATTATTGTCCCAGCCAGTTTACAGATAACACTAGTTTGCAGTTGCACATAGTAAGCCACACTGGAGAAAGACCATTTCAGTGTATTATTTGTTTCAAAAAGTTTTCAAGAAAAGACAGCCTGAACAAACATAATATGCGTTCCCACACTGGAGAAAATCCTCAATTTAAATGCATTATATGTTTAAAGACATTTTCTTCTCAAATCGCCCTAACAGAACATGAGCGCATACATTCTGGAGAAAAACCCTATAAATGTGAATTGTGTGAAAAGGAAATTAGATCGAAGTATATCTTCAAGAAACATATGAGATTGCACACCGGGGAAAATCTTATAAAGTGTGATTATTGTCCCAAACAGTTTACAGCTAAGACTCAATTTGAGGCACACGTAGTAAGCCACACTGGAGAAAGACCTTGTCAGTGTGTTGTTTGTTTCAAGAACTTCACAACCAAAGCAAGCCTGGCTAAACATATGCATACCCACACTGGAGGTAACCGTCCCTTTAAATgcattaaatgtttaaaaatattttctacaaaaaacTCACTAACAGACCATGAGCGCATACATTCTGGAGAAAAACCCTATAAATGTGAATTGTGCCAAAGGGAATTTAGATCAAAGAATCCCTTCAACAAACATATGAGACTCCACACAGGCAAAAAACTTATAAAGTGTGATTATTGTCCCAGGCAGTTTACAGGTAACAGTGAATTTCAGAGACATGTAGTGAGTCACACTGGAGAAAGACCATTTCATTGTATTATTTGTTTTAAGGAATACTCAAACAAAGGAAACCTGAACAAACATATACGTTCccatactggagaaaaacttaATGAGTGTAATATTTGTCATAAAACGTTTACTGAAAGATGCAAGTTAAAGAAGCACATGATGACAATACACCCAGGAGTAAAGTTTTTTGAATGTGATATTTGTCGTGAACAATTCAGTACAAATAATCTATGTGTTGAGCACATGCGTACACATGGAGTAGAAAAATCATAG
- Protein Sequence
- MAVYEIQRETDNRMSENRLAIPGLQRMKIPFDINEEFGKHDERYGKSQLSTSLNLENIKNEPEGEYSDIPSSVVQKDDIDSDMLQHPAAAFECDICLKKISQNSQCLVHRQTHTKEEPFRYDVCFKDFNGESTLKRHMKLHSGSSIVTESNQSTQKEDLHGEDKTLQPITSKNSSNISTDNDELTHSTLFNIEENHMQQTKFDNHLKEKPNRRAFVHNKEKDKPFQCRICYKHFSIITNLTRHIFRHADLARFKNRIQKRTGEQQLRCHICFVQFTFKDSLRNHLLRHVGEKPFECDICCKLFFQNNNCIVHRRTHINGKPFEEKALDSCYSNMPTEIDQSMENMPLNVEEKSFQHIALDHFSNVPKVEYFQSNFYLKQFPLQRNLDRHTLTHLGIKPFKCIICLKTFSSQNTLTDHERIHSGEKPYKCELCEKEIRSKYIFKKHMRLHTGENLIKCDYCPKQFTAKTQFEAHVVSHTGERPFQCVVCFKNFTTKASLARHMHTHTGGNRPFKCIICLKIFSTKNSLTDHERIHSGEKPYKCELCQREFRSKNPFNKHMRLHTGEKLIKCDYCPSQFTDNTSLQLHIVSHTGERPFQCIICFKKFSRKDSLNKHNMRSHTGENPQFKCIICLKTFSSQIALTEHERIHSGEKPYKCELCEKEIRSKYIFKKHMRLHTGENLIKCDYCPKQFTAKTQFEAHVVSHTGERPCQCVVCFKNFTTKASLAKHMHTHTGGNRPFKCIKCLKIFSTKNSLTDHERIHSGEKPYKCELCQREFRSKNPFNKHMRLHTGKKLIKCDYCPRQFTGNSEFQRHVVSHTGERPFHCIICFKEYSNKGNLNKHIRSHTGEKLNECNICHKTFTERCKLKKHMMTIHPGVKFFECDICREQFSTNNLCVEHMRTHGVEKS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -