g105317.t1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diabrotica virgifera
Gene Symbol
-
Assembly
GCA_003013835.2
Location
ML025071.1:2298-4640[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 2.9e-05 0.0075 19.3 1.1 1 23 10 32 10 32 0.98
2 17 0.0014 0.36 14.0 0.9 2 23 39 60 38 60 0.96
3 17 0.0016 0.42 13.8 2.0 1 23 207 229 207 229 0.93
4 17 2.3e-06 0.0006 22.8 2.8 1 23 234 256 234 256 0.99
5 17 0.0013 0.33 14.2 3.2 1 23 262 284 262 284 0.98
6 17 9.4e-05 0.024 17.7 1.2 1 23 290 312 290 312 0.96
7 17 1.3e-05 0.0035 20.4 1.6 1 23 472 495 472 495 0.98
8 17 6.8e-07 0.00018 24.4 4.3 1 23 501 523 501 523 0.99
9 17 0.021 5.6 10.3 4.5 1 23 529 551 529 551 0.98
10 17 9.9e-05 0.026 17.6 0.8 1 23 557 580 557 580 0.96
11 17 3.5e-05 0.0091 19.1 0.8 1 23 591 613 591 613 0.96
12 17 7.5e-05 0.02 18.0 2.5 1 23 619 641 619 641 0.98
13 17 6.4e-06 0.0017 21.4 3.5 1 23 647 669 647 669 0.99
14 17 0.0035 0.91 12.8 3.2 1 23 675 697 675 697 0.96
15 17 4.1e-05 0.011 18.9 1.2 1 23 703 725 703 725 0.97
16 17 0.0059 1.5 12.1 2.7 3 23 733 753 732 753 0.93
17 17 3.2e-05 0.0084 19.2 5.0 1 23 758 780 758 780 0.99

Sequence Information

Coding Sequence
ATGTCTAGTCACCCCGGCTCAAAAGAGTTCAAATGTGATGTTTGTCCTAGTGAGTTCACAAGAAAACGATCATTACAAAAACATCTTGCACGTCACGTAAAAAACAATTCAATGCAGTGTGAAATTTGCTATAAAATATGTCAAAGTGAGTCAGAACTGAAAAACCACATGGTCGTTCATGTGTTCAAACCAAAATCTAAAAGTATAAGATTTTTCCATCGCATTGTAAAAGAAAAGCCACCCCCTCAGAGTGAAACTAACGAAGACATTCCATGTGTCCTTACCCATACTAAAACTCGAAAAGATAATGAGTGTAATGAACAGAAAAACACATTTAGCtgtaatgaaattgaaaatacCTTTAGCAATAACGGAACAGGAGAAACTTATACATGTATAAAAACGGAAGAGCCATTTCTATACGGTGAAACGGAATGTGTTACATATAATGAAACAACTGACccctttttatttaaaaaactgaaACATGAGCTTACATacgatgaaaaaaaggaagaatcgGTTTCAAACAGTACAACGGAAGACAAATCAACACATGTTATTGTTCATAATCAAGATAACTCCTTAAAACATGACATGCGACTTCCCACAGGAAATTTTAAGTGCCATATTTGTTTTATGAGATATAAAAACAAAATCGATCTAGAACAACATATACCTACTCACATATTTGACACATATCAATGTCAAATATGCCCCAAAAGATTTAAACATGCTAAGACTTTGAGAGGTCATATGCGACTTCATACTGGGAAGAATCTTTTTCCATGTAAATTTTGtaacaaaaagtgcacaacggaATATAGATTAGAACTACATATGCTCGTCCATTCCGATTATAGATTGTATAAATGCAACATTTGTTCTGGTAGTTTTAAAACAAGTAGCGATTTCATTCGGCATGAGTTTGTTCACAAGCAAAAACAAAAGATCGCTGGATGTCTTGACGCTGGACATGCAGTAACCAATAAGGAAGCAGAGTATTCATCTAAAAAtaacgaaaataaaaatatgttaccTAACGTTGAAGCCGAAAAGGGTAATACTGGATGTAAACCAACATTACAATCGTGTACAGTCACTGATTTTGGTTGTACAGTAGAAAAATTAAGTACTAGAGGTGGAAATGATTTATCTTGTAAGGAACAATCATTTATGTTCGGGGGAATGAAAACAAAACCATTCACTTCTGACGAATCTAATAAAAGTGCCTTTAAGTACATCAAAACTGAAGAAGACAAATTATGTGATAAAACCGAGAAATCGATTATGTGTAACGAAACAAAAGAGTCGTCGGCATGTGTAAAAACGATGGGAAATGAAATATCTTTGGATAAAGAAATTATTACAGGAAATGAATCAAAAAAATCTGTGTCTCTGTATCAAACAAATTATAAATGTTATATATGTTCTAAATACTTTTCAGATGAATATATGTTGCGAAGGCATATTACGACAGTGCATAATGAAGAAAAATTGTTTAAGTGTAAAGAATGTGGCAAAAGTTTAAAAACTCGTAACTCATTCAGAAAGCACATGCGAACACATACCGAAGAAGAAATGTTTGAATGTAAAGTATGTTCTAAAAAATTTAGAGAAAAGTATGTGCACAATGATCATATGCGGACTCATACAGGAGAAAACCATTATACATGTAGCCTTTGTTCAGCAACGTTTAGAAACAGGACCTTGCTAAGAAATCATATTGCATCAAGTCACATggaagaaaagaaagaaatagaAAGGCCATTTACGTGCAGTATTTGCTCCAAAAAGTTCACTGCACAGTCGAGTTTAGATCGCCACATGGGCCTTCACAATGAAGGACAATCTTTTAAATGTAACACATGCTCCAAGGAATTTAAGTTGGAGGTGTATCTGCAAAACCATATGCGGTACCACATTGGAGAACATCAATTTAAATGTACGATGTGTGAGAAGCAGTTCAGAAGGAATTTTACTTTAAAAGAACATATGCTTACTCATTcgaaagaaaaacaatttaagtGTCCATTGTGTCCGGAAGAGTTTCAtacgaaaaaacttttttttagacACAAAGCCAATCATCTCGGTGATCTAACGTTTAACTGTGAAGTTTGTTCTCAAACTTTCGCGAATAATTATTTATTCAAAGCCCATATGAGTAAGCACCGCCAACAGAAGGCCAACACATGTATTATATGTTCAGAGACGTTTCCACACCATGACGATTTGAAAACTCATCAACTTACTCATGGCAAGAAACCATTCAAATGTCATCTCTGTCAAAAACGATTTAAAGCAAAAGGGAATTTGAAGTCACATTTAAATAGACACTAG
Protein Sequence
MSSHPGSKEFKCDVCPSEFTRKRSLQKHLARHVKNNSMQCEICYKICQSESELKNHMVVHVFKPKSKSIRFFHRIVKEKPPPQSETNEDIPCVLTHTKTRKDNECNEQKNTFSCNEIENTFSNNGTGETYTCIKTEEPFLYGETECVTYNETTDPFLFKKLKHELTYDEKKEESVSNSTTEDKSTHVIVHNQDNSLKHDMRLPTGNFKCHICFMRYKNKIDLEQHIPTHIFDTYQCQICPKRFKHAKTLRGHMRLHTGKNLFPCKFCNKKCTTEYRLELHMLVHSDYRLYKCNICSGSFKTSSDFIRHEFVHKQKQKIAGCLDAGHAVTNKEAEYSSKNNENKNMLPNVEAEKGNTGCKPTLQSCTVTDFGCTVEKLSTRGGNDLSCKEQSFMFGGMKTKPFTSDESNKSAFKYIKTEEDKLCDKTEKSIMCNETKESSACVKTMGNEISLDKEIITGNESKKSVSLYQTNYKCYICSKYFSDEYMLRRHITTVHNEEKLFKCKECGKSLKTRNSFRKHMRTHTEEEMFECKVCSKKFREKYVHNDHMRTHTGENHYTCSLCSATFRNRTLLRNHIASSHMEEKKEIERPFTCSICSKKFTAQSSLDRHMGLHNEGQSFKCNTCSKEFKLEVYLQNHMRYHIGEHQFKCTMCEKQFRRNFTLKEHMLTHSKEKQFKCPLCPEEFHTKKLFFRHKANHLGDLTFNCEVCSQTFANNYLFKAHMSKHRQQKANTCIICSETFPHHDDLKTHQLTHGKKPFKCHLCQKRFKAKGNLKSHLNRH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-