g14065.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- Znf711
- Assembly
- GCA_003013835.2
- Location
- ML015102.1:1003237-1014993[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.038 10 9.5 1.0 3 23 56 76 55 76 0.97 2 23 0.032 8.4 9.7 2.8 1 23 82 104 82 104 0.98 3 23 0.12 31 7.9 0.9 1 23 107 129 107 129 0.83 4 23 7.9e-05 0.021 17.9 3.2 1 23 135 158 135 159 0.97 5 23 0.024 6.2 10.1 2.9 1 23 170 193 170 193 0.95 6 23 2.9e-05 0.0075 19.3 0.7 2 23 203 224 202 224 0.97 7 23 0.00013 0.035 17.2 4.4 1 23 230 252 230 252 0.98 8 23 0.038 10 9.5 1.0 3 23 313 333 312 333 0.97 9 23 0.014 3.7 10.9 1.4 1 23 339 361 339 361 0.98 10 23 0.022 5.8 10.2 0.7 1 23 364 386 364 386 0.90 11 23 0.00039 0.1 15.8 3.1 1 23 392 415 392 416 0.97 12 23 0.05 13 9.1 2.1 1 23 427 450 427 450 0.95 13 23 1.9e-05 0.005 19.9 0.3 2 23 460 481 459 481 0.97 14 23 3.8e-05 0.0099 19.0 2.4 1 23 487 509 487 509 0.98 15 23 0.038 10 9.5 1.0 3 23 553 573 552 573 0.97 16 23 0.047 12 9.2 3.2 1 23 579 601 579 601 0.98 17 23 0.014 3.6 10.9 0.8 1 23 604 626 604 626 0.94 18 23 1.5e-05 0.0039 20.2 2.3 1 23 632 655 632 656 0.97 19 23 0.05 13 9.1 2.1 1 23 667 690 667 690 0.95 20 23 8.2e-05 0.021 17.9 0.5 3 23 701 721 699 721 0.97 21 23 1.2e-05 0.0032 20.5 2.2 1 23 727 749 727 749 0.98 22 23 4e-05 0.01 18.9 0.5 1 23 755 777 755 777 0.98 23 23 1.4e-05 0.0036 20.3 0.0 1 22 783 804 783 804 0.95
Sequence Information
- Coding Sequence
- ATGCATAAGGAATCGCGCATGGTATATGTCAGTATTAGTCCATCCACTCTAAACACCGGGAAGaagaaacaacaaagaaaatctTCCATAAAAGCTCCAGAACCAGAAATCGACGAAGAGCTGATGAAGCTAACGGACATCTTAAAACTAGACAAGCCGCTTCTATGTGAAACCTGCAAGAGAGCCTTCACGGATCATTTGGAACTAGCTTTACATTCGAGGGAACATAGTCCTGCTAAGTTATACACGTGTCACTTATGTGGCTTCTCAGCAAATTACAAGAGACGAATGCGAAGACATATCAACGGTCATGCTGGATATAAATGCCAGATATGTTTAAAGGTGTTTAGGAAAGCTAGAGTTGCCTTGAAGCATTCCTATAGCCATACTGGAGAGAAGATGTACCAGTGCGAGATATGTGGCAAGTATTTGACTAATTCTAAAGGTCTGCATAAACATCTGAATACGATACATCACGAAATCATAACTGGAAAACCTTTGGTTAAGTTCGATTGTCGTGTATGTTTCAAACACTACGAAACTGCGACGGGTCTGCGACGGCACTATTCCAGTACGCATAAGGAAATGGGTGTAGACTTGAGTGTAGTCTGCGACGTGTGTGGAAAGCGTATTTCAAACAGGACTAGACTGAAGCGACATATGCAAACGCATACGGGCCAAAAACCGTTCCCTTGTACGGTCTGCGAGAGACACTTCGCGACGAAATGTCTGTTGACGTCACATCTTCGTACCCATACGGGAGAAAAACCAAACACCGGGAAGAAGAAACAACAGAAAAAACCTCCCATAAAAGCTCCAGTGTCAGaaaagaagaaacaaaagaagaaaaataatccTATAACCGTTCCAGAACCAGAAATCGACGAAGAGCTGATGAAGCTAACAGACATCTTAAAACTGAACAAGCCCCTTTTATGTGAAACCTGCAAGAGAGCCTTCACAGATCATTTGGAACTAGCTTTACATTCGAGGGAACATAGTCCTGCTAAGTTATACACGTGTCACTTATGTGGCTTCTCAGTAGATTACAAGATTAAAATACGAAGACATATCAACGGTCATGCTGGATATAAATGCGAGATATGTCTAAAGGTGTTTAGGAAAGCTAGAGCTGCCTTGAAGCATTCCTATAACCATTCTGGAGAGAAGATGTACCAGTGCGAGATATGTGGCAAGCATTTGGCTAATTCTGAAGTTCTGCATAAACATCTAAACACGATACATCACGAAATCATAACTGGAAAACCTTTGGTTAAGTTCGATTGTCGTGTATGTCTCAAACACTACGAATCTGCGACGGGTCTGCGACGGCACTACTCCAGTACGCATAAGGAAATGGGTGTAGACTTGACTGTAGTCTGCGACGTGTGTGGAAAGCGTATTTCAAACAGTGCTAGACTGAAGCGACATATGCAAACGCATACGGGCCAAAAACCATTCCCTTGTACGGTCTGCGAGAGGAACTTCGCGACGAAATGTCTGTTGACGTCGCATCTTCGCACCCATACGGGAGAAAAACCAAACACCGGGAAGAAGAAACAACAGAAAAAATCTCCGATGACCGTTCCAGAACCAGAAATCGACGAAGAGCTGATGAAGCTAACAGACATCTTAAAACTAGACAAGCCCCTTCTATGTGAAACCTGCAAAAGAGCCTTCACAGATCATTTGGAACTAGCTTTACATTCGAGGGAACATAGTCCTGCTAAGTTATACACGTGTCACTTATGTGGCTTCTCAGCAAATTACAAGAGACGAATACGAAGACATATCAACAGTCATGCTGGATATAAATGCGAGATATGTCTAAAGGTGTTTAGGAAAGCTAGAGCTGCCTTGAAGCATTCTTATCGACATACTGGAGAGAAGATGTACCAGTGCGAGATATGTGGCAAGCATTTGGCTAATTCTAAAGGTCTGCGTAAACATCTGAATACGATACATCACGAAATCATCACTGGAGAACCTTTGGTTAAGTTCGATTGTCGTGTATGTCTCAAACACTACGAATCTGCGACGGGTCTGCGACGGCACTATTCCAGTACGCATAAGGAAATGGGTGTAGACTTGACTGTTATTTGTCAAGTGTGCGGAAAGCGTATTTCAAGCAGGGATAGACTGACGCGACATATGAGCACACATACCGGCCAAAAACCGTTCCCTTGTACGGTCTGCGAGAGACACTTCGCGACGAAATTTCTGTTGACGTCACATATTCGCACCCATACGGGAGAAAAACCGTACGTGTGTTCGTATTGCGGGAAGCGGTTCGGACAGTCGGGGCCTTATAGATATCATATTAAGATTCATACGGGGGATAGGAGGTATCCTTGCACCATTTGCGGTAAAGCTTTTATTGCGAATAGTAATTTGAAAATACATACTAATACTTGTTGTGCTCCTGTCAGAGATTGA
- Protein Sequence
- MHKESRMVYVSISPSTLNTGKKKQQRKSSIKAPEPEIDEELMKLTDILKLDKPLLCETCKRAFTDHLELALHSREHSPAKLYTCHLCGFSANYKRRMRRHINGHAGYKCQICLKVFRKARVALKHSYSHTGEKMYQCEICGKYLTNSKGLHKHLNTIHHEIITGKPLVKFDCRVCFKHYETATGLRRHYSSTHKEMGVDLSVVCDVCGKRISNRTRLKRHMQTHTGQKPFPCTVCERHFATKCLLTSHLRTHTGEKPNTGKKKQQKKPPIKAPVSEKKKQKKKNNPITVPEPEIDEELMKLTDILKLNKPLLCETCKRAFTDHLELALHSREHSPAKLYTCHLCGFSVDYKIKIRRHINGHAGYKCEICLKVFRKARAALKHSYNHSGEKMYQCEICGKHLANSEVLHKHLNTIHHEIITGKPLVKFDCRVCLKHYESATGLRRHYSSTHKEMGVDLTVVCDVCGKRISNSARLKRHMQTHTGQKPFPCTVCERNFATKCLLTSHLRTHTGEKPNTGKKKQQKKSPMTVPEPEIDEELMKLTDILKLDKPLLCETCKRAFTDHLELALHSREHSPAKLYTCHLCGFSANYKRRIRRHINSHAGYKCEICLKVFRKARAALKHSYRHTGEKMYQCEICGKHLANSKGLRKHLNTIHHEIITGEPLVKFDCRVCLKHYESATGLRRHYSSTHKEMGVDLTVICQVCGKRISSRDRLTRHMSTHTGQKPFPCTVCERHFATKFLLTSHIRTHTGEKPYVCSYCGKRFGQSGPYRYHIKIHTGDRRYPCTICGKAFIANSNLKIHTNTCCAPVRD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -