Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: PXJM02465826.1:1-1659[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.3e-05 0.0033 20.5 1.5 1 23 69 91 69 91 0.98

2 14 0.00076 0.2 14.9 2.1 1 23 96 118 96 118 0.98

3 14 1.9e-05 0.0051 19.9 0.9 2 23 124 145 123 145 0.96

4 14 7.8e-07 0.0002 24.3 1.8 1 23 154 176 154 176 0.98

5 14 8.2e-05 0.021 17.9 3.9 1 23 181 203 181 203 0.98

6 14 1.8e-06 0.00047 23.1 0.4 1 23 209 231 209 231 0.98

7 14 1.6e-06 0.00042 23.3 2.0 1 23 237 259 237 260 0.96

8 14 2.8e-05 0.0074 19.3 3.1 1 23 266 288 266 288 0.98

9 14 0.00038 0.099 15.8 2.2 1 23 294 316 294 316 0.99

10 14 0.029 7.5 9.9 1.3 1 23 322 344 322 344 0.97

11 14 1.2e-05 0.0031 20.5 1.9 1 23 347 369 347 369 0.99

12 14 5.7e-07 0.00015 24.7 6.0 1 23 374 396 374 396 0.98

13 14 1.1e-06 0.00028 23.8 0.5 1 23 402 424 402 424 0.97

14 14 1.7e-06 0.00043 23.2 1.7 1 23 430 452 430 452 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.3e-05	0.0033	20.5	1.5	1	23	69	91	69	91	0.98
2	14	0.00076	0.2	14.9	2.1	1	23	96	118	96	118	0.98
3	14	1.9e-05	0.0051	19.9	0.9	2	23	124	145	123	145	0.96
4	14	7.8e-07	0.0002	24.3	1.8	1	23	154	176	154	176	0.98
5	14	8.2e-05	0.021	17.9	3.9	1	23	181	203	181	203	0.98
6	14	1.8e-06	0.00047	23.1	0.4	1	23	209	231	209	231	0.98
7	14	1.6e-06	0.00042	23.3	2.0	1	23	237	259	237	260	0.96
8	14	2.8e-05	0.0074	19.3	3.1	1	23	266	288	266	288	0.98
9	14	0.00038	0.099	15.8	2.2	1	23	294	316	294	316	0.99
10	14	0.029	7.5	9.9	1.3	1	23	322	344	322	344	0.97
11	14	1.2e-05	0.0031	20.5	1.9	1	23	347	369	347	369	0.99
12	14	5.7e-07	0.00015	24.7	6.0	1	23	374	396	374	396	0.98
13	14	1.1e-06	0.00028	23.8	0.5	1	23	402	424	402	424	0.97
14	14	1.7e-06	0.00043	23.2	1.7	1	23	430	452	430	452	0.99

Sequence Information

Coding Sequence: NGTTCCTTCTCTGAAGACGCACACAGTGAGTTGAACGCGAATAAATGCTTCTTAGAAAAGGACACAAAAAACCTTGAAAATCTGTTCACCTTTGACAAACAGTATTCACATTATGGTGCAACAGTGGCGTCTAAAATTGGTTCCAAAGAGTTTTCGACAAAGTCTATTGAAACTCATATGACAGTGCACAGCATAGAAAAACCTTTTGAATGTGAAGTTTGTTTCAAACAGTTTACGAACAATTATGAGGTGAAATCGCATATGAGGCTTCATACCGAAAAAACATTTAAATGTGAACTTTGTTCTAAAGAGTATTTAAAGCAATATTCTTTAAAAACACATATGAGGTGGCACAGTGGAGAAACTATTTCATGTCAAATTTGCTTTAAACAATATACAACGAATTATGATTTAAAGTTGCATATGAGGGCGCACATTGGAGGGATCAAAGAAAGACGTTTTACATGTGAGGTGTGCTCCAAAACTTTTATAAACAAGAATACTTTAAAGCGACATTTAAGATGGCACACTGGAGAAGCTTACACGTGCGAGATTTGTTCCAAACAGTTCGTAGACTATCATTATTTCACCGTCCATATGAGATTCCACGCAGGCGCAAAACCATttcaatgtgaaatttgttcgAAACAACTTTCACAAAAGTCCGCGCTTAAAGTGCATATGAGAgcacatactggagaaaaaccttttGTATGTGAAATTTGCTCTAAATCTTATATGACAAGCACGAATTTAAAGGTACATATGAGAGAGCACCACACTAAAGAATTGCCTTTCGAATGTAAAATTTGCTCTAAGAAATGTGCAACAAGTAGTAGATTAAAAAGTCATATGATGGTGCATATCGAAAAAGGTCCTTTCAAGTGCAGAATTTGCTTGAAACGATATAAAACAGATAAAGATCTTCAATTGCACATCAAATCGCACAATGTAGAAGAGACTTTTACATGCGAAACTTGCGCAAGACAATTTTCTACAGATTCCGAGTTAAAATTTCATTCAAGAATACATAGGGAATTCAAATGTGAAGTGTGCTCCAAAGGATTTTTCAGCAATAAAACGTTGAAATTACATATGAAGGTGCATACTAGAGAACTTTTCTCATGTCAAATGTGCCATAaacaattttcaacaaaatacaaCTTAAAAATACACATGAGAAGGCATACAGGAGATAGGCCTTTCCCCTGTGAACTTTGCTCCAAACGGTTTGCCAAGAAATCTGAATTAACTGCACACATGAAATGGCACACTAGAGACGTTCTTTATACATGTGAAATTTGCAACAAACAGTTTGTTACCAAGACAATATTAACTAGACATATGAGAACTCATCAAGGTGAAAACCCAATTCAAATGTGA
Protein Sequence: XSFSEDAHSELNANKCFLEKDTKNLENLFTFDKQYSHYGATVASKIGSKEFSTKSIETHMTVHSIEKPFECEVCFKQFTNNYEVKSHMRLHTEKTFKCELCSKEYLKQYSLKTHMRWHSGETISCQICFKQYTTNYDLKLHMRAHIGGIKERRFTCEVCSKTFINKNTLKRHLRWHTGEAYTCEICSKQFVDYHYFTVHMRFHAGAKPFQCEICSKQLSQKSALKVHMRAHTGEKPFVCEICSKSYMTSTNLKVHMREHHTKELPFECKICSKKCATSSRLKSHMMVHIEKGPFKCRICLKRYKTDKDLQLHIKSHNVEETFTCETCARQFSTDSELKFHSRIHREFKCEVCSKGFFSNKTLKLHMKVHTRELFSCQMCHKQFSTKYNLKIHMRRHTGDRPFPCELCSKRFAKKSELTAHMKWHTRDVLYTCEICNKQFVTKTILTRHMRTHQGENPIQM*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -