g14034.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015102.1:586208-619653[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.8 1.2e+03 2.9 0.1 2 15 111 124 110 128 0.86 2 22 0.37 97 6.4 5.1 1 23 138 160 138 160 0.98 3 22 0.0049 1.3 12.3 1.6 1 23 166 188 166 188 0.94 4 22 4.7e-05 0.012 18.7 4.0 1 23 194 217 194 217 0.98 5 22 0.0032 0.84 12.9 1.8 1 23 229 252 229 252 0.93 6 22 0.00072 0.19 14.9 0.7 3 23 263 283 261 283 0.97 7 22 6.8e-07 0.00018 24.4 2.7 1 23 289 311 289 311 0.97 8 22 8.8e-06 0.0023 21.0 0.5 1 23 317 339 317 339 0.99 9 22 0.92 2.4e+02 5.2 0.3 2 17 419 434 418 440 0.82 10 22 0.0066 1.7 11.9 0.8 1 23 474 496 474 496 0.95 11 22 1.9e-05 0.0049 19.9 0.9 1 23 502 525 502 525 0.98 12 22 0.0075 1.9 11.7 0.7 2 23 538 560 537 560 0.91 13 22 0.081 21 8.5 0.4 3 23 571 591 569 591 0.94 14 22 2.9e-07 7.5e-05 25.6 1.2 1 23 597 619 597 619 0.99 15 22 7e-06 0.0018 21.3 0.6 1 23 625 647 625 647 0.99 16 22 7.8e-05 0.02 18.0 1.1 2 22 653 673 652 676 0.90 17 22 0.0044 1.1 12.5 0.9 1 23 694 716 694 716 0.96 18 22 0.00032 0.084 16.0 1.3 1 23 722 745 722 745 0.95 19 22 0.0085 2.2 11.6 3.5 1 23 757 780 757 780 0.93 20 22 0.0077 2 11.7 0.4 3 23 791 811 789 811 0.97 21 22 2.2e-06 0.00057 22.8 3.6 1 23 817 839 817 839 0.98 22 22 4.1e-06 0.0011 22.0 0.9 1 23 845 867 845 867 0.98
Sequence Information
- Coding Sequence
- ATGTTCGTTTTACTAACCAAAGTATGTTTTAGAAAAATCAAAACTAAAAGAAAACCAAGGGTTAAAAAGGAAAAACGTACAGACTCCAGTCCAGTAAATATCAAGGAAGAAGTGCTAGACATTAAAGCAGAAAACTCAGAAGACTGTACAGAATCTGAAGTAGTTAAACCAGTCGTTACGAAGGCCAAAAGAGGTAGGAAAAAAGGTAGCAAGAACCTTCCTAAAACCGACAAAGACAAAGATAAGCCAGAGAAATCCAGACGGAAATGCACGAATCCTAAAAAAATCGTAATGCATCATCCGCCTCCAATGGAATTAACCGAACCGATCCAGTGTGATATCTGCAACTCTTCATATAATAACAACGTTGACTATGCATTTCATTCGTTATGCCACAGCGAAGATGGTAAATATACGTGCCACATGTGCAACTACCGGAATAGTTCGAGATACCACATGGAGATGCACGTGAGGGCGCATGAGGGTACCACCAAGTACAAATGCGAGATCTGCGATAAGGCTTTTACCATCAGTACGCATGCGCTAGAACATAAAAACTttcatactggtgaaaaaccgttCCAGTGTGAGATATGTGGCAAGCATTTTATGTTTTCGTGGCATCTGGCTTCGCATAGGAGGACTTCACATTATGAAATATTAACAGGCAAACCATTAGTAAAATTCGACTGTCTTGAGTGCAATAAACACTACGAATCAGCAAGCGGCTTAAGAAGGCATAACATCAAGAAACACAAATCAGAAGAAATCGACCTTTCTGTCATCTGCGAAATATGCGGAAAGCGACTGTCTAGCAAAGAAAAACTCAAGTTCCACTTACGCACACACACGGGATACAAACCCCACGCCTGCCACGTCTGTCCGAAAAGCTTTTCCAAAAAGGATCAGCTGATCGAGCACATTCGAACGCATACGGGCGAAAAGCCGTACGTGTGTAAGCTGTGCGGCAAAGGCTTCGCGCAGAGGACGCCTTTGAAGACGCACGAGAGAACGCATAACGTCGATAGGCCGGGCAGCGCTTGCACTCTCTGTGGgaaAGTAAAAAGAAATTCCCAAAGAACCAAAAAAGACAAAGGTGGTCCTGGTTCAACAATCGCCAAAGCTCGTACTCGGCGAAGAAAACAAGCAGAACCCAAACGAGCGTTGAGCGAACCAAAAACCAAGAAAGATCAAGACCAAAAATCAAGAAAGCACGGCCAACATCCTCCTCCTCTTCTCCTCGCAGACCCCATCCAATGTGACTATTGCACTGCTATGTTCAACAATAACGTAGATTTCGCATTTCATTCTTTAAATCACAGTACAGACAAGAAGTACACATGCCATTTGTGCAGCTACAGAAGCTTGTACAAATACAAAATGGGGATACACGTGAGAACCCACGAAGGAACCAACAGGTTCAAGTGTGACCTATGTGGGAAGGCTTTCATGGGTCAGAAGCAAGCACAAGAGCACAAAAACTttcatactggtgaaaaaccgttTCAATGCGAGATTTGTGGGAAGGATTTTATGTTTTCGTCGATGTTGGCGACTCACAGGAGGAGCTACCACTACGAGATTCTTACAGGAAAACCTCTGGTAAAATTCGACTGCATCGAATGCAACAAACACTACAGATCCGCAGAAGGCCTCAGAACACACATCATTAAAATCCACAAGGCCCACGAAATAGACCTAACGGTCATCTGCGAGATCTGCGGCAAAAAGCTAGCAAACAAGAAGAGACTCAAGTTTCACCTTAGTATCCACACAGGCCACAAACCGTACTCATGCCACGTGTGTCCAAAAAGCTTTGCTAAGAAGGATCAGCTCGTGGAGCATATTCGGACGCACACTGGTGAGAGGCCTTATGTGTGCAAACAGTGTGGTAAAGGATTTGCTCAGAGAACACCCTTAAAAACCCACGAAAGGACACATGCGGACAAAACGTGTACATGTAATTTGTGTGGTTTGACATTTAAGTCCAAAACTGAGTTGGAGAGTCACATTAAAGGTCCCTTACATCGTTGGTACCAAATAGGAATTCACGTAAGGAAACACGAAGGTACAACAAGATTTAAATGCGAAATTTGTGATAAAGCATTCATGGTTCAAAAACAAGCAGAAGAACACAAACacgtgcacactggagaaaagccctACCAATGTGACATGTGCGGCAAACATTTCATGTTTTCTTGGAGGCTAACAGCTCACATGAGTGGCAGCCATTACGAAATGGTTACAGGTAAACCTTTGGTGAAATTCGACTGCCAGCAGTGCAAAAAACACTACCGATCAGCAAGCGGTCTCAGAACTCACAACATAAAAAAACACAACACCACGGAAATCGATTTAACTGTCATCTGTGAGATTTGCGGCAAAAGGCTGGCCAATCGAGAAAGACTCAAGTTCCATCTGCGCACGCATACTGGATTTAAGCCACATTCTTGCCACATTTGTCCCAAAAGCTTTTCTAAGAAGGATCAACTCGTTGACCACGTAAGAACGCATACGGGGGAGAGGCcatttgtttgtaaaatttgtgGAAGAGGTTTCGCTCAAAGAACGACGTTGAAGACGCATGAGAAGACCCATAAAAAGGATAGGGTTGCAACGTga
- Protein Sequence
- MFVLLTKVCFRKIKTKRKPRVKKEKRTDSSPVNIKEEVLDIKAENSEDCTESEVVKPVVTKAKRGRKKGSKNLPKTDKDKDKPEKSRRKCTNPKKIVMHHPPPMELTEPIQCDICNSSYNNNVDYAFHSLCHSEDGKYTCHMCNYRNSSRYHMEMHVRAHEGTTKYKCEICDKAFTISTHALEHKNFHTGEKPFQCEICGKHFMFSWHLASHRRTSHYEILTGKPLVKFDCLECNKHYESASGLRRHNIKKHKSEEIDLSVICEICGKRLSSKEKLKFHLRTHTGYKPHACHVCPKSFSKKDQLIEHIRTHTGEKPYVCKLCGKGFAQRTPLKTHERTHNVDRPGSACTLCGKVKRNSQRTKKDKGGPGSTIAKARTRRRKQAEPKRALSEPKTKKDQDQKSRKHGQHPPPLLLADPIQCDYCTAMFNNNVDFAFHSLNHSTDKKYTCHLCSYRSLYKYKMGIHVRTHEGTNRFKCDLCGKAFMGQKQAQEHKNFHTGEKPFQCEICGKDFMFSSMLATHRRSYHYEILTGKPLVKFDCIECNKHYRSAEGLRTHIIKIHKAHEIDLTVICEICGKKLANKKRLKFHLSIHTGHKPYSCHVCPKSFAKKDQLVEHIRTHTGERPYVCKQCGKGFAQRTPLKTHERTHADKTCTCNLCGLTFKSKTELESHIKGPLHRWYQIGIHVRKHEGTTRFKCEICDKAFMVQKQAEEHKHVHTGEKPYQCDMCGKHFMFSWRLTAHMSGSHYEMVTGKPLVKFDCQQCKKHYRSASGLRTHNIKKHNTTEIDLTVICEICGKRLANRERLKFHLRTHTGFKPHSCHICPKSFSKKDQLVDHVRTHTGERPFVCKICGRGFAQRTTLKTHEKTHKKDRVAT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -