Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML016819.1:310493-311979[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00011 0.03 17.4 2.3 1 23 39 61 39 61 0.96

2 16 7.1e-06 0.0018 21.3 2.9 1 23 67 89 67 89 0.99

3 16 4.8e-06 0.0012 21.8 1.8 1 23 95 117 95 117 0.98

4 16 0.00036 0.093 15.9 1.0 1 23 123 145 123 145 0.98

5 16 2e-05 0.0052 19.8 1.9 1 23 151 173 151 173 0.98

6 16 0.00036 0.093 15.9 1.0 1 23 179 201 179 201 0.98

7 16 2e-05 0.0052 19.8 1.9 1 23 207 229 207 229 0.98

8 16 0.00036 0.093 15.9 1.0 1 23 235 257 235 257 0.98

9 16 2e-05 0.0052 19.8 1.9 1 23 263 285 263 285 0.98

10 16 3.1e-06 0.00081 22.4 1.5 1 23 291 313 291 313 0.98

11 16 1.9e-05 0.005 19.9 2.1 1 23 319 341 319 341 0.98

12 16 8.8e-06 0.0023 21.0 2.0 1 23 347 369 347 369 0.99

13 16 4.4e-06 0.0012 21.9 2.3 1 23 375 397 375 397 0.99

14 16 0.00057 0.15 15.2 2.8 1 23 403 425 403 425 0.96

15 16 3.8e-07 9.9e-05 25.2 0.8 1 23 431 453 431 453 0.99

16 16 7.9e-06 0.0021 21.1 0.2 1 23 459 481 459 481 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00011	0.03	17.4	2.3	1	23	39	61	39	61	0.96
2	16	7.1e-06	0.0018	21.3	2.9	1	23	67	89	67	89	0.99
3	16	4.8e-06	0.0012	21.8	1.8	1	23	95	117	95	117	0.98
4	16	0.00036	0.093	15.9	1.0	1	23	123	145	123	145	0.98
5	16	2e-05	0.0052	19.8	1.9	1	23	151	173	151	173	0.98
6	16	0.00036	0.093	15.9	1.0	1	23	179	201	179	201	0.98
7	16	2e-05	0.0052	19.8	1.9	1	23	207	229	207	229	0.98
8	16	0.00036	0.093	15.9	1.0	1	23	235	257	235	257	0.98
9	16	2e-05	0.0052	19.8	1.9	1	23	263	285	263	285	0.98
10	16	3.1e-06	0.00081	22.4	1.5	1	23	291	313	291	313	0.98
11	16	1.9e-05	0.005	19.9	2.1	1	23	319	341	319	341	0.98
12	16	8.8e-06	0.0023	21.0	2.0	1	23	347	369	347	369	0.99
13	16	4.4e-06	0.0012	21.9	2.3	1	23	375	397	375	397	0.99
14	16	0.00057	0.15	15.2	2.8	1	23	403	425	403	425	0.96
15	16	3.8e-07	9.9e-05	25.2	0.8	1	23	431	453	431	453	0.99
16	16	7.9e-06	0.0021	21.1	0.2	1	23	459	481	459	481	0.98

Sequence Information

Coding Sequence: ATGAAAGCACCTTCGCCTCATAAAGAAGAGGAATATATAAGTGGACACTCTGAAGAGAagacattaaataaaaatacggaaacACATTTGAAAATTAATGCTAAAGAAAGACCTTTTAAATGTAAAATTTGTCTTAAACAGTTTACTACAAAACGTTATTTAAATGTACATGTGACACTTCATACTGGGAAAagaccttataagtgtgaaactTGTCTTAAGCGGTTTGCTCAAAAACATCAGTTAAATCTGCATATAAGAGTTCATACTGGCGAGAGACCGTATGAGTGTGAAACTTGTCTTAAGCGGTTTAGACAACGTAGTACTTTAAATAATCATATGACAGTTCACACTGAGGAAAAACGTTATAAATGTATAATTTGCCCCAAGCAGTTTGCTATAAGACATTCTTTAAATCTACATATGAGAGTTCATACTGGCGAGAGACCGTATGAGTGTGAAACTTGTCTTAAGCGGTTTAGACAACGTACTACTTTAAATAATCATATGACAGTTCACACTGAGGAAAAACGTTATAAATGTATAATTTGCCCCAAGCAGTTTGCTATAAGACATTCTTTAAATCTACATATGAGAGTTCATACTGGCGAGAGACCGTATGAGTGTGAAACTTGTCTTAAGCGGTTTAGACAACGTACTACTTTAAATAATCATATGACAGTTCACACTGAGGAAAAACGTTATAAATGTATAATTTGCCCCAAGCAGTTTGCTATAAGACATTCTTTAAATCTACATATGAGAGTTCATACTGGCGAGAGACCGTATGAGTGTGAAACTTGTCTTAAGCGGTTTAGACAACGTACTACTTTAAATAATCATATGACAGTTCACACTGAGGAAAGACGTTATAAATGTAAAATTTGTCCCAAGCAATTTGCTCTAAAACGTTATTTAAATCGACATATGACAGTTCATACTGGTGAAAGACCTTACGAGTGCGCCATTTGTTTTAGGCGGTTTAGTCATCGTACTACTTTAAATAATCATATGATAGTTCATACTGGCAAAGGACATTATAAATGTGACATTTGTCTTAAACAGTTTACTAAACAACGTTATTTAAATGAACACATTAGAAGTCATACTGgcgaaaaaccttataaatgtgacaTTTGTCTAAAACAGTTTCGTGTAAAACGAAATTTAAATTCACACATGAAAAGCCATACTGACGACagaccttataagtgtgaaactTGTCTTAAGCGGTTTACTCACCTTAGTGCTTTAAGTCAACATGTTTTAtttcatactggagaaaaaccgtataCGTGTGAAGTTTGTCTTAAGCAGTTTTCTCAAAAAAGTAATTTAAATGGACATATGAGAGTTCACACTGGGGAAAGACCTTACGAGTGCGAGATTTGTCTTAAGCGGTTTAGTGAACGTAGGAATTTAAATATTCATATGGcaattcacactggtgaaaaaccttataaatgtgacaTTTGTCTTAAGCAGTTN
Protein Sequence: MKAPSPHKEEEYISGHSEEKTLNKNTETHLKINAKERPFKCKICLKQFTTKRYLNVHVTLHTGKRPYKCETCLKRFAQKHQLNLHIRVHTGERPYECETCLKRFRQRSTLNNHMTVHTEEKRYKCIICPKQFAIRHSLNLHMRVHTGERPYECETCLKRFRQRTTLNNHMTVHTEEKRYKCIICPKQFAIRHSLNLHMRVHTGERPYECETCLKRFRQRTTLNNHMTVHTEEKRYKCIICPKQFAIRHSLNLHMRVHTGERPYECETCLKRFRQRTTLNNHMTVHTEERRYKCKICPKQFALKRYLNRHMTVHTGERPYECAICFRRFSHRTTLNNHMIVHTGKGHYKCDICLKQFTKQRYLNEHIRSHTGEKPYKCDICLKQFRVKRNLNSHMKSHTDDRPYKCETCLKRFTHLSALSQHVLFHTGEKPYTCEVCLKQFSQKSNLNGHMRVHTGERPYECEICLKRFSERRNLNIHMAIHTGEKPYKCDICLKQX

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -