Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML022261.1:1511-3810[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.18 47 7.4 2.2 1 21 143 163 143 165 0.94

2 17 3.6e-06 0.00094 22.2 1.4 3 23 181 201 179 201 0.97

3 17 1.6e-05 0.0042 20.1 1.2 1 23 206 228 206 228 0.98

4 17 9.8e-05 0.025 17.7 1.1 2 23 234 255 233 255 0.96

5 17 0.00016 0.042 17.0 0.7 1 23 264 286 264 286 0.98

6 17 1.1e-05 0.0029 20.6 2.6 1 23 291 313 291 313 0.98

7 17 3.2e-07 8.4e-05 25.5 4.8 1 23 319 341 319 341 0.99

8 17 4.3e-06 0.0011 21.9 0.3 1 23 347 370 347 370 0.96

9 17 1.4e-05 0.0035 20.4 1.8 1 23 376 398 376 398 0.98

10 17 0.00036 0.094 15.9 2.1 1 23 404 426 404 426 0.98

11 17 1.2e-06 0.00032 23.6 0.7 1 23 432 454 432 454 0.99

12 17 4.2e-06 0.0011 21.9 0.7 1 23 459 481 459 481 0.98

13 17 1.5e-06 0.00039 23.4 0.2 1 23 487 509 487 509 0.97

14 17 1.2e-05 0.003 20.6 1.2 1 23 515 537 515 537 0.99

15 17 1.1e-05 0.0027 20.7 0.8 1 23 543 565 543 565 0.98

16 17 0.00013 0.034 17.3 3.4 1 23 571 593 571 593 0.98

17 17 0.002 0.52 13.5 0.2 2 23 600 621 599 621 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.18	47	7.4	2.2	1	21	143	163	143	165	0.94
2	17	3.6e-06	0.00094	22.2	1.4	3	23	181	201	179	201	0.97
3	17	1.6e-05	0.0042	20.1	1.2	1	23	206	228	206	228	0.98
4	17	9.8e-05	0.025	17.7	1.1	2	23	234	255	233	255	0.96
5	17	0.00016	0.042	17.0	0.7	1	23	264	286	264	286	0.98
6	17	1.1e-05	0.0029	20.6	2.6	1	23	291	313	291	313	0.98
7	17	3.2e-07	8.4e-05	25.5	4.8	1	23	319	341	319	341	0.99
8	17	4.3e-06	0.0011	21.9	0.3	1	23	347	370	347	370	0.96
9	17	1.4e-05	0.0035	20.4	1.8	1	23	376	398	376	398	0.98
10	17	0.00036	0.094	15.9	2.1	1	23	404	426	404	426	0.98
11	17	1.2e-06	0.00032	23.6	0.7	1	23	432	454	432	454	0.99
12	17	4.2e-06	0.0011	21.9	0.7	1	23	459	481	459	481	0.98
13	17	1.5e-06	0.00039	23.4	0.2	1	23	487	509	487	509	0.97
14	17	1.2e-05	0.003	20.6	1.2	1	23	515	537	515	537	0.99
15	17	1.1e-05	0.0027	20.7	0.8	1	23	543	565	543	565	0.98
16	17	0.00013	0.034	17.3	3.4	1	23	571	593	571	593	0.98
17	17	0.002	0.52	13.5	0.2	2	23	600	621	599	621	0.95

Sequence Information

Coding Sequence: ATGGAGGAACAAGAAGACAATTACACAAAAAGCGAACTATCTAATAATATAAAATGCCAAACCGAATTAGAGAATGATGGTGTGAATAATACAGAATTTCCGGTTAccataaaaaatgaatttaaaaaagaaaTGTTTCTACCTGAGGATAATCCAACTAATGAAGATTCTAAAGATTGGTTCAATCAAATGAATACTGCAATATACATTGAAAATGTAAAACATGAAGAAATTGAAGATGATAGTAATTTGTTGAATTGTAAAATTTTTAAGTCTGAACCAAATATTAAGGAAGAGGAAGACGTAATTGAAGCAAATCAGAGTCAATGTGGTTCATCCTCTGAAGAAATACACAATGATGCTAACAGTGATTTGAAGTCGGACAAACGCTTCGTAGGAGAGGACATAAAAACTGTTGTTAATTTATTCATTTGTGAAATTTGCTCCAAACCGTATTTATTAGAGCGCAATTTAAGAAAACATATGAAGTGCCATGATGGTGAAGAAAAACGGCATGATGGTGAAGAAAAACCTTTGGCGTGCGAAGTTTGTTTCAAACGGTTTAGAACTAATTTTGCACTAAAATCGCATATGAGGACTCATACTGGAGAAACATTTAAGTGTGAACTTTGCCCCaaagaatatttttcaaattactcTTTAAAATTACATATGAGGTGGCACACCGGAGAAACTTTATCATGTAAACTATGCTCCAAACAATTTGAAAGAATTTCCAAACTCAAAGCGCATATGATAAGGCACAGTGGAGGGAAAAAAGAAAGACGTTTTACATGTGCGATTTGCTCCgaaacatttttaaacaaaaataatttaacgCGACATGTAAGATGGCATACTGGGAGAACTTACACGTGCGAGATCTGCTCCAAACAATTTGTAGACAATCATTATTTCAACGTTCATATGAGATTGCATAGGGGCGAAAAACCTTTTCAGTGCGAAATTTGTTCAAAACATTTTTCGCACAACTCGTCATTAAAAGTGcatatgagagtgcacactggagaaaaacccttCATCTGTGACATCTGCTCCAAACCGTATATAACAAGCACGAATTTAAAGGTACATATGAGAGAGCGACACACTAAAGTAATGCCCTTCGAATGTAAATTTTGCCCTAAGAAGTATGCATCAAGTAGTAGATTAAAAAGACACATGACAGTGCATTTGCCATTCCAAAAATTCACATGCGAAATTTGTTCAAAACAATTTTCTACAGATTCTTCCTTGAGATTTCATATGACAACACATACCGAAGAAAAACCCTTCAAATGTGACGTTTGCTCCAAAGGATTTGGTAACACTTCTTCGTTAAAAGTACATATGAGGATGCATACGAAAGAGCTTTTCCCATGTGAAATATGCcctaaacaatttttaacaaattaCAACTTAAAAATACATATGAGAAGGCATACAGGAGATAGGCCGTTCCCCTGTGAACTTTGCCCCAAACGGTTTGCAAAGAAATCTGAGTTAACTGCACACATTAAATGGCATACTAGAGACGTTCTTTTCACATGTGAAATTTGCAACAAAGAGTTTGTTACCAAAACAATATTAACGAACCATATGAAAacgcacactggggaaaaaccattCTCTTGTGAAATTTGcagtaaaatttttgttaccaAGACGGTCTTAAACACCCATATGAAAATGCACACTAGAGGAGGACCGTTCTCCTGTGAAATTTGCTGCAAACAGTTTGTTACCAAAAGATCATTAGCTAATCATATGAGAACTCATACGGGGGAAAACCCAGTCAAATGTGAAGTTTGCATCAAAGATTTCGCACAAAGTTCTATGTTACAAACCCATATGACTGATCACACAGGAAACTAA
Protein Sequence: MEEQEDNYTKSELSNNIKCQTELENDGVNNTEFPVTIKNEFKKEMFLPEDNPTNEDSKDWFNQMNTAIYIENVKHEEIEDDSNLLNCKIFKSEPNIKEEEDVIEANQSQCGSSSEEIHNDANSDLKSDKRFVGEDIKTVVNLFICEICSKPYLLERNLRKHMKCHDGEEKRHDGEEKPLACEVCFKRFRTNFALKSHMRTHTGETFKCELCPKEYFSNYSLKLHMRWHTGETLSCKLCSKQFERISKLKAHMIRHSGGKKERRFTCAICSETFLNKNNLTRHVRWHTGRTYTCEICSKQFVDNHYFNVHMRLHRGEKPFQCEICSKHFSHNSSLKVHMRVHTGEKPFICDICSKPYITSTNLKVHMRERHTKVMPFECKFCPKKYASSSRLKRHMTVHLPFQKFTCEICSKQFSTDSSLRFHMTTHTEEKPFKCDVCSKGFGNTSSLKVHMRMHTKELFPCEICPKQFLTNYNLKIHMRRHTGDRPFPCELCPKRFAKKSELTAHIKWHTRDVLFTCEICNKEFVTKTILTNHMKTHTGEKPFSCEICSKIFVTKTVLNTHMKMHTRGGPFSCEICCKQFVTKRSLANHMRTHTGENPVKCEVCIKDFAQSSMLQTHMTDHTGN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -