g14114.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015102.1:1392709-1401018[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.048 12 9.2 0.6 3 23 133 153 131 153 0.96 2 27 0.58 1.5e+02 5.8 0.1 2 23 178 200 177 200 0.94 3 27 0.3 78 6.7 4.6 1 23 205 227 205 227 0.94 4 27 0.1 27 8.1 2.0 2 23 264 285 263 285 0.92 5 27 0.001 0.26 14.5 0.5 1 23 294 317 294 317 0.96 6 27 0.0037 0.95 12.7 1.7 1 23 320 343 320 343 0.90 7 27 2.1e-05 0.0054 19.8 0.2 1 23 349 371 349 371 0.94 8 27 3.8e-05 0.0098 19.0 0.5 1 23 376 398 376 398 0.98 9 27 0.003 0.79 13.0 5.1 1 23 404 427 404 427 0.95 10 27 0.0024 0.62 13.3 3.0 1 23 441 463 441 463 0.98 11 27 4.9e-05 0.013 18.6 0.1 1 23 469 491 469 491 0.98 12 27 1.1e-05 0.0029 20.6 0.1 1 23 497 519 497 519 0.98 13 27 1.8e-06 0.00048 23.1 1.6 1 23 525 547 525 547 0.98 14 27 0.21 55 7.2 1.4 1 14 553 566 553 574 0.82 15 27 0.031 8 9.8 1.1 2 23 764 785 763 785 0.96 16 27 0.014 3.7 10.8 2.1 1 23 837 859 837 859 0.95 17 27 0.19 48 7.3 0.9 2 23 896 917 895 917 0.87 18 27 0.00045 0.12 15.6 1.0 1 23 926 949 926 949 0.96 19 27 0.0084 2.2 11.6 2.1 1 23 952 975 952 975 0.90 20 27 1.1e-05 0.0029 20.6 0.7 1 23 981 1003 981 1003 0.94 21 27 6.4e-05 0.017 18.2 0.3 1 23 1008 1030 1008 1030 0.98 22 27 0.0003 0.078 16.1 5.3 1 23 1036 1059 1036 1059 0.97 23 27 1.7e-06 0.00044 23.2 1.9 1 23 1092 1114 1092 1114 0.98 24 27 6.8e-06 0.0018 21.3 1.2 1 23 1120 1142 1120 1142 0.98 25 27 2.6e-05 0.0067 19.5 0.0 1 23 1148 1170 1148 1170 0.98 26 27 1.5e-07 3.8e-05 26.6 0.4 1 23 1176 1198 1176 1198 0.98 27 27 0.061 16 8.9 1.5 1 21 1204 1224 1204 1225 0.88
Sequence Information
- Coding Sequence
- ATGGTGACATCAAAAACTGCTCCACGTGCACCTAAAGTAATACCATCACAAAACCAGCTATTGATAAAAACAAAGACTTCTTCAGTAATCCCGAAAATTAGGATGccatcaaatataaaaattatgatgCCATCAAATACTGTTGGATCTGGATCTCCAACTTCACTGAAAGCAATCCCAACCAAATATCTACTAAATCCCCCGACAACTTTGTCAAATGTACATTCAAATACACCAGTCGTAACCCAGAGTGAATGTGCCTCGCCTACATATGTTAATCCTTTCGACTATACTCCTGAAGTAAAAAATACTTCATCGTCCATTGGCACACAAAAAGTAGCCGATGCAGTGAAAAAGGACCAAAATATAAAGCAAGAAAAACCATTCGCTTGGGCCTGTAAAATTTGCAAGCAAGAATTCCATGAAAAAGAACTTCTTCTGGAGCACTACGAAATGCACAAGAATACCACAGATCAGCTTGGTGATATCGACGAAAATAACGATGCATATAACACAGGCAGCAAAGATATAAGTTGTCCAATTTGTATGACGACGTATGATACCATAGATAGTTATCAAAATCATGTTGCTCGTAAACACAAACCAAAAGACCATAGTTGTGGTACGTGTAAACATACTTTTACTGACGAGTTTGACTTGAGTATACATAATACCAAGCACAATCAAGATCCAGAATTGTACGAGTGCGTGATATGCAAAGAGTTTCAAACAAAAGACACCAAGATTTTATACGAGCATATATCCAAAGAGCATGTAAAAGAGAAAATGTATTGCAATGAATGTAACAAGACGTTCTTATCGAAGACGTGGTTCAAAGATCATAAAATATTTCACGTGGGCATCAATAAAAGAGATACATATGAATGTGGCCGATGCGACTCTAAATTCACGTCCAACTTTTCGTTGATGGAACATATGCAAGAAGCCCACATCAAATACAAATGCAATGAGTGTGATGTAACCTTTCCCTACAAGCTAAATTTAGACAGACATAACAGCCATGTGCATTTAAAAGAAAGACCTTTCCTTTGTAATGATTGTGGGAAAACATTTCCAAAATTAGAAAATCTTAGGAGTCACGAAATAGTCCATAAAGCAGCTAGGTATGTTTGTTTTGTTTGTGGTAAAATATTTAAGAAGAAAGAAGGCTTTGACCTTCATATGAGAGTTCATACTGGGGAAAAACCACATAAGTGCAATATCTGTGGTAAAGCTTTCAGGACCAAGACCGGTTGTAACACACATCAGAAGCAAGTTCATGGCGAGGGACCATGGCGAGTCAATACCAAGGAGAGACGATATCCTTGTTCCGAATGTAACAAATCTTTCTATAATACACACATTCTTACGCAACATAAGCGAGTCCATACCGGGGAGAAACCATTTTCTTGTTCCGTGTGTAAGAAACCTTTCGCTCAGGTATCCGCTCTTAAGGTACATGAGCGAATTCATACAGGCGAGAGACCATATCCTTGTTCCGTATGTAAGAAATCTTTCATCGATAATGCGGCTATTGTGAGACATATGCGAGTCCATACCGGGGAGAAACCATATTCTTGTTCCATATGTAAGAAAGCTTTCTCCCAGTCAACCGCTCTTCATGAACATATGAGAATTCATACCGGGGAGAGATCATATCCTTGTTCCAAATGTAAGAAAAAGTTTATTACCAAAGCCGTGAAAGATAAACATGAGAAAAAGTGTatGATAATAAACAATTCAACTTTTTTGGTCAACTCATTATCATCTTCCAAGAGTTCCAGCCTTCAAAATGTTCAAGCCTTGCCTCGACTACTACATCGTCCAGGAACACagaaatattacattattttaccaAAGAACACTGTATCTGCAGCTGTTCCATCACAAACCCAGCTGGTGACATCAATAACTGCTTCACCTGCACTTAAAGTATATCCATCACAAAACCAACTACTGATGAAAACAAAGACTTCTTCAGTAATCCCGAAAATTAGGATGccatcaaatataaaaattatgatgTCAACAAATACTGTTGGATCTGCATCTCCAACTTCAATGAAAGCAATCCCAACCAAATATCTACTAAATCACCCGACAACTTTGTCAAATGTACATTCAAATGCACCAGTCGTAACCCAGAGTGAATGTGCCTCGCCCACATATGTTAATCCTTTCGACTATACTCCTGACGTAAAAAATACTTCATCATCCATTGGCACACAAAAAATAGCCAATGTAACAAAAAACGACCAAAATTTAATGCAGGAAAAAGTATTCGCTTGGACCTGTAAAATTTGCAAGCAAGAATTCCATGAAAAAGAACTTCTTCTGGAGCATTACGAAATGCACAAGAATAACACAGATCAGCTTGGTGATATCGACGAAAATAACGATGCATATAACATTAGTGGCAAAGATGTAACTTGTCCAATTTGTTTGACGACCCATATTAATATAACTTGCTATCAACAACATGTTGGTAGTAAACACAAACCAAAAGACCATAATTGTGATAAGTGTAAACAGGCTTTTACTGACGAATTTGACTTGAGTGTACATAATACCACGCACAATCAAGATCTAGAATGGTACGAGTGCGTGATATGCAAAAAGTTTCGAACAAAAAACACCAAATCCTTATACGAGCATATATTCATAGagcatgtcaaagaagaaatgtATTGCAATGAATGTGACAAGACATTCTTATCGAAGACGTGGTTCGAAGGTCATAAAATATTTCACGTAGACATTAATAAAGGGGATACATATAAATGTGGCCGATGCGAATCTACTTTCACGTCGAACTATTCGTTGATGGAACATATGCAAGAATCCCATACCAAATACAAATGCAATCAGTGTGATGTAACCTTTCCCTACAAGCTAAATTTAGACAGACATAACAGCCATGTGCATTCATATGAAAGACCGTTTCTTTGTAATGAATGTGGGAAAACATTTACAAAATTAACCAATCTTAGGAATCACGAAATAATCCATAAAGCAGGGAGCTATGTTTGTTATGTTTgtggtaaaatatttaaaaagaaagAAGGCTTTGACATTCATATGAGAGGTCACACTGGGGAAAGACCATATAAATGCAATTTCTGCGATAAAGCTTTTGCTCACAAGAGCGATTATAACACACATAATAAGAAAAAACATGGCGAGAGACCATATCCTGGTTCCGATAGTAAGAAATCTTCCTTCAATGGATCCGCTCAAAAGATACGTATGCGAGTCCAGACCAAGGAGAAACCATATTCTTGCTTCGAATGTAACAAATCTTTCTCCAATACATCCTTTCTTACGATACACATGCGAGTCCATTCCGGTGAGAAACCATATTCTTGTTCCATGTGTAAGAAAGCTTTCTCTCAGTCAACCAGTCTTAAAATACATGAGCGAATTCATACCGGCGAGAGACCATATCCTTGTTCCGTCTGTGAGAAAGCTTTCATCAATAGAGCGGCTCTTTCGAGACATGCGCGAATCCATAGCGGGGAGAAACCATATCCTTGTTCCATATGTAAGAAAGCTTTCTCCCAGTCAACCAGTCTTCAGGTACATATGAGAATCCATACCGGGGAGAGATCATATCCTTGTTCCAAATGTAAGAAAAAGTTTATTACCAAAGCCATGAAAGATAAACATGAGAAAAAGTGTATGTAA
- Protein Sequence
- MVTSKTAPRAPKVIPSQNQLLIKTKTSSVIPKIRMPSNIKIMMPSNTVGSGSPTSLKAIPTKYLLNPPTTLSNVHSNTPVVTQSECASPTYVNPFDYTPEVKNTSSSIGTQKVADAVKKDQNIKQEKPFAWACKICKQEFHEKELLLEHYEMHKNTTDQLGDIDENNDAYNTGSKDISCPICMTTYDTIDSYQNHVARKHKPKDHSCGTCKHTFTDEFDLSIHNTKHNQDPELYECVICKEFQTKDTKILYEHISKEHVKEKMYCNECNKTFLSKTWFKDHKIFHVGINKRDTYECGRCDSKFTSNFSLMEHMQEAHIKYKCNECDVTFPYKLNLDRHNSHVHLKERPFLCNDCGKTFPKLENLRSHEIVHKAARYVCFVCGKIFKKKEGFDLHMRVHTGEKPHKCNICGKAFRTKTGCNTHQKQVHGEGPWRVNTKERRYPCSECNKSFYNTHILTQHKRVHTGEKPFSCSVCKKPFAQVSALKVHERIHTGERPYPCSVCKKSFIDNAAIVRHMRVHTGEKPYSCSICKKAFSQSTALHEHMRIHTGERSYPCSKCKKKFITKAVKDKHEKKCMIINNSTFLVNSLSSSKSSSLQNVQALPRLLHRPGTQKYYIILPKNTVSAAVPSQTQLVTSITASPALKVYPSQNQLLMKTKTSSVIPKIRMPSNIKIMMSTNTVGSASPTSMKAIPTKYLLNHPTTLSNVHSNAPVVTQSECASPTYVNPFDYTPDVKNTSSSIGTQKIANVTKNDQNLMQEKVFAWTCKICKQEFHEKELLLEHYEMHKNNTDQLGDIDENNDAYNISGKDVTCPICLTTHINITCYQQHVGSKHKPKDHNCDKCKQAFTDEFDLSVHNTTHNQDLEWYECVICKKFRTKNTKSLYEHIFIEHVKEEMYCNECDKTFLSKTWFEGHKIFHVDINKGDTYKCGRCESTFTSNYSLMEHMQESHTKYKCNQCDVTFPYKLNLDRHNSHVHSYERPFLCNECGKTFTKLTNLRNHEIIHKAGSYVCYVCGKIFKKKEGFDIHMRGHTGERPYKCNFCDKAFAHKSDYNTHNKKKHGERPYPGSDSKKSSFNGSAQKIRMRVQTKEKPYSCFECNKSFSNTSFLTIHMRVHSGEKPYSCSMCKKAFSQSTSLKIHERIHTGERPYPCSVCEKAFINRAALSRHARIHSGEKPYPCSICKKAFSQSTSLQVHMRIHTGERSYPCSKCKKKFITKAMKDKHEKKCM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -