Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML020824.1:8638-10197[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0041 1.1 12.6 5.4 2 23 49 70 48 70 0.97

2 17 0.0016 0.42 13.8 4.6 1 21 76 96 76 98 0.95

3 17 4e-06 0.001 22.0 0.6 1 23 104 126 104 126 0.99

4 17 9.4e-06 0.0024 20.9 1.9 1 23 132 154 132 154 0.99

5 17 8e-07 0.00021 24.2 0.9 1 23 160 182 160 182 0.99

6 17 0.00031 0.081 16.1 0.4 1 23 188 210 188 210 0.98

7 17 1.1e-05 0.0029 20.6 0.8 1 23 216 238 216 238 0.99

8 17 7e-06 0.0018 21.3 3.8 1 23 244 266 244 266 0.98

9 17 3.3e-06 0.00086 22.3 0.3 1 23 272 294 272 294 0.96

10 17 4e-06 0.001 22.0 1.3 1 23 300 322 300 322 0.98

11 17 1.1e-05 0.0028 20.7 1.0 1 23 328 350 328 350 0.97

12 17 9e-06 0.0023 20.9 4.0 1 23 356 378 356 378 0.98

13 17 1.3e-05 0.0034 20.4 0.2 1 23 384 406 384 406 0.98

14 17 6.6e-08 1.7e-05 27.6 0.9 1 23 412 434 412 434 0.98

15 17 0.00013 0.033 17.3 0.4 1 23 440 462 440 462 0.98

16 17 1.6e-05 0.0041 20.2 7.1 1 23 468 490 468 490 0.99

17 17 0.00022 0.057 16.5 5.0 1 23 496 518 496 518 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0041	1.1	12.6	5.4	2	23	49	70	48	70	0.97
2	17	0.0016	0.42	13.8	4.6	1	21	76	96	76	98	0.95
3	17	4e-06	0.001	22.0	0.6	1	23	104	126	104	126	0.99
4	17	9.4e-06	0.0024	20.9	1.9	1	23	132	154	132	154	0.99
5	17	8e-07	0.00021	24.2	0.9	1	23	160	182	160	182	0.99
6	17	0.00031	0.081	16.1	0.4	1	23	188	210	188	210	0.98
7	17	1.1e-05	0.0029	20.6	0.8	1	23	216	238	216	238	0.99
8	17	7e-06	0.0018	21.3	3.8	1	23	244	266	244	266	0.98
9	17	3.3e-06	0.00086	22.3	0.3	1	23	272	294	272	294	0.96
10	17	4e-06	0.001	22.0	1.3	1	23	300	322	300	322	0.98
11	17	1.1e-05	0.0028	20.7	1.0	1	23	328	350	328	350	0.97
12	17	9e-06	0.0023	20.9	4.0	1	23	356	378	356	378	0.98
13	17	1.3e-05	0.0034	20.4	0.2	1	23	384	406	384	406	0.98
14	17	6.6e-08	1.7e-05	27.6	0.9	1	23	412	434	412	434	0.98
15	17	0.00013	0.033	17.3	0.4	1	23	440	462	440	462	0.98
16	17	1.6e-05	0.0041	20.2	7.1	1	23	468	490	468	490	0.99
17	17	0.00022	0.057	16.5	5.0	1	23	496	518	496	518	0.98

Sequence Information

Coding Sequence: ATGAAGACTTCCAAGGAACAGCTTGGTGTATGGGGTGGTCTTGAATACAAACATTTTATGGATTACAATGAACCTAAGACGAGCAAAGAATCTTCTAATGCAATTGAAATAACCACTGATTTGAAGAAAGTGGATGGAAAATGGCAGTGTAGTATTTGTTGTAAACATTATATTAAAAGATCTTACCTAAAGCAGCATATGAgaattcacactggagaaaagccataTTCTTGTACTGTTTGTGCTAGAAATTTTATTACTTCATCTCATTTAAGATATCACATGCAGTGTCATACTGAggaaaaaccctttaaatgtgaTGTTTGTTCAAAAGAATTGTCAAGTAAATCCCAATTAACAATTCATTTGAGAATTCATACTGGAGAGAAGCCATATACGTGTTCAATTTGTTCAAAGAAGTTTATGACCAGATCTTACCTCGGGCAGCATATGAAGATACATGCAGGTataaaaccctttaaatgtgaGCTTTGTCCAAAGAGATTTATTCAGAAGTATGCTTTAGCAACACACCAAAGAAGTCATTCTGGAGAAAAACCATTTAGTTGTGAGGTTTGTTTACGGGGATTTTCTCAAAAGAAAAGCATGATAATTCACATGGGAACACATTCAGATGAACGACCGTTTAAATGCACTATTTGCTCTAAAGCTTTTAGCCAAGATATCCTTTTAGATCGACACATGAAATCCCATTTAGCGAACAAACCTTTTAAGTGTGACAACTGTCCAAGACAATTCACTACCAGATCCCATTTAAAAGAACATTCCAGAATTCATTCTGGTGAAAAACCTTTTGTCTGTCCAATATGTTCAAAATCTTTTACTCAGAGGTCTAGCTTAGGAAATCATGTATATATTCATAAGACTGAGAGACCATTTAAATGTGATATCTGTCTGAAAGGATTTACTCAGAGATCAAGCTTGCGTCTACATATGAGCAACCATACACAGGAAAAACCATTCAAATGCGAGTTATGTCCAAAACGGTTTGCTCGAAAATCTGTTCTCGATCGTCACATGCTGTTTCACTCCGGAGAAAAACCTTTTAAGTGTGAGATTTGCTCTAAATGTTTCGTCCTACCTTCTCACTTAAAACAACACTTGCTAAGCCATACTGGCGAAAAACCTTTTAACTGTGAGTACTGTCCAAAAAGATTTGCCCTAAAACCTGGTCTGATAATACATATGAGAAGTCATTCTGGAGAAAAACCGTATCAATGCCCACTTTGTCCAAGAAGATTTTCCCAAAAGTCTAATTTGACAGTACACCTAAATTACCATGGCAAAGAGGATCGATTTAAGTGTAAGATATGCACAGAGAGGTTTGGTGAAGAAAAAGATTTAAATATTCACATGGTTACGCATACTGGAGAGAAAGCATTTAAGTGTCATGATTGCTATAAACAATTCTCGAAAAAGGCTCATCTACGTGATCATGTTCGcactcacactggagaaaaaccatttaCTTGCACAGTTTGTTGTAAAAAATACTCTCAGAAGTCTAGTTTAAACGTTCATATGAAAAGCCATTCTTAG
Protein Sequence: MKTSKEQLGVWGGLEYKHFMDYNEPKTSKESSNAIEITTDLKKVDGKWQCSICCKHYIKRSYLKQHMRIHTGEKPYSCTVCARNFITSSHLRYHMQCHTEEKPFKCDVCSKELSSKSQLTIHLRIHTGEKPYTCSICSKKFMTRSYLGQHMKIHAGIKPFKCELCPKRFIQKYALATHQRSHSGEKPFSCEVCLRGFSQKKSMIIHMGTHSDERPFKCTICSKAFSQDILLDRHMKSHLANKPFKCDNCPRQFTTRSHLKEHSRIHSGEKPFVCPICSKSFTQRSSLGNHVYIHKTERPFKCDICLKGFTQRSSLRLHMSNHTQEKPFKCELCPKRFARKSVLDRHMLFHSGEKPFKCEICSKCFVLPSHLKQHLLSHTGEKPFNCEYCPKRFALKPGLIIHMRSHSGEKPYQCPLCPRRFSQKSNLTVHLNYHGKEDRFKCKICTERFGEEKDLNIHMVTHTGEKAFKCHDCYKQFSKKAHLRDHVRTHTGEKPFTCTVCCKKYSQKSSLNVHMKSHS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -