g90442.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML019475.1:11711-39768[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.3e-05 0.0035 20.4 0.8 3 23 66 87 64 87 0.97 2 20 0.00047 0.12 15.5 1.3 3 23 96 116 94 116 0.97 3 20 2.7e-06 0.0007 22.6 1.1 1 23 122 145 122 145 0.96 4 20 0.00047 0.12 15.5 1.3 3 23 154 174 152 174 0.97 5 20 1.2e-05 0.0032 20.5 0.8 1 23 180 203 180 203 0.97 6 20 0.00078 0.2 14.8 0.9 3 23 212 232 210 232 0.97 7 20 3.5e-06 0.00091 22.2 0.7 1 23 238 260 238 260 0.97 8 20 4.7e-05 0.012 18.7 1.0 3 23 268 289 266 289 0.97 9 20 0.00047 0.12 15.5 1.3 3 23 297 317 295 317 0.97 10 20 3.4e-05 0.0088 19.1 1.0 1 23 323 346 323 346 0.97 11 20 0.00025 0.064 16.4 1.0 3 23 355 375 353 375 0.97 12 20 0.00011 0.028 17.5 3.2 1 23 381 404 381 404 0.98 13 20 0.0003 0.077 16.1 0.7 1 23 410 432 410 432 0.98 14 20 8.8e-06 0.0023 21.0 1.2 1 23 438 461 438 461 0.97 15 20 6e-05 0.016 18.3 0.4 3 23 470 490 468 490 0.97 16 20 3.7e-06 0.00095 22.1 3.4 2 23 549 570 548 570 0.97 17 20 1.8e-05 0.0048 19.9 2.7 3 23 578 599 576 599 0.97 18 20 3.5e-05 0.0091 19.1 1.5 3 23 607 627 605 627 0.97 19 20 7e-06 0.0018 21.3 0.6 3 23 635 656 633 656 0.97 20 20 3.8 9.8e+02 3.2 0.3 3 13 664 674 662 681 0.88
Sequence Information
- Coding Sequence
- ATGATTTTAGGTTTCAAATGTGAAGATACACTAACTGACGAAAATAACGAATTAAAAAATCATCTTATAAATAACCAATTGAACCAATGTACAACTGACGTTAGGAAAGTGACGATTGTTGAAAAGCCTTTTGCGTCTGAAAAGAAAAATTTTAGAAGACATTTGATAGTTCACactgcaaaaaaattatttggatGTGAAATATGCACAAAACAGTTTTCACAAAGTTCTTACTTGAAAATTCATATGATCAGAAGACACAACACTGTTGAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTGTTACACATAATGAGTTAAAATTGCATATGACGGTGCATACTGGTGAAAGACCATTTATATGTGAAATATGCACAAAACAGTTTTCACAAAGTTCTTACTTGAAAATTCATATGATCAGAAGACACAACACTGTTGAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTGTTACACATAATGAGTTAAAATTGCATATGACGGTGCATACTGGTGAAAGACCATTTATATGTGAAATATGCACAAAACAGTTCTCACGAAGTATTTCCTTAAAAGTTCATATAATGAGAAAGCACAACACTGGTCAAAAACCGTTTGGATGTGAAATGTGCACAAAACAGTTTGTAGTACATAATGAGCTAAAAAGGCACATGgcagtgcatactggtgaaaaaccattttcGTGTGAAATTTGCCCCAAACAGTTTTCACGAAGTTCggttttaaaaaaacatttgagcATTCACAGTGGGGAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAGAAGAAACTACTTAAAAGATCATATGTTGAGAATTCACACTGATGAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTGTTACACATAATGAGTTAAAATTGCATATGACGGTGCACACTGGTGAAAGACCATTTAGCTGTGAAATATGCACAAAACAGTTTTCAAAAAGTATTTCCTTAAAAGTTCATATAATGAGAACGCACAACACTGGTCAAAAACCGTTTGGATGTGAAATGTGCACAAAACAGTTTGTAACACATATTGAGTTAAAAAGGCATATGGcggtgcatactggtgaaaaaccatttagaTGTGAAATATGCACAAAACAGTTTTTACAAAGTTCTCACTTAAAAGTTCATATGATGAGAagtcacactggtgaaaaaccatttgaatgtgaaatatgCACAAAACAGTTTGTTGCACATAGTGGTTTAAAATTGCATATGACGGTGCATACTGGTGAAAGACCCTTTAGATGTGAAATATGCACAAAACAGTTTTCACAAAGTATTTCCTTAAAAGTTCATATCATGAGAAAGCACAACACTGGTCAAAAACCGTTTGGATGTGAAATATGCACAAAACCGTTTGTAACACATATTGAGTTAAAAAGGCACATGGCGGTGCATACTCGTTTCAAATGTGaagaaaatgaaaacaatgaATTAAATTATCTGATAAATAACCAATTGAACCAATGTACAACTGACGTTAGGAAAGTGACTATTGTTGAAAAACCTTTTGCGTGTGAAAAGAAAAATTTACGAAGACATGTGACAGTTCACACTGAAGAAAAATCATTAAGATGTGGAATATGCACAAAACAGTTTTCACAAAATACTCACTTAAAAGTCCATATGAGAAGGCACACAGGTGAAAAACTATTTGGATGTGAAATATGCACAAAACAGTTTTCAAGAAGTGAACACTTAAAAGATCATATGATGAGAAGGCACACTGAAGAAAAACCATTTGGATGTGCAATATGCACAAAACAGTTTTCAAGTAGTGCTCACTTAAAAAAACATATGGTGATGCATAGTGATCAGAAACCATTTGGTTGTGAAATATGCACAAGACAGTTTTCACAAAGTGCTAACTTAAAAAATCATATGATGagaattcacactggtgaaaaaccatttggatGTGAAATATGCACAAAACAGTTTGTAACACATACTGAGAAACTGAACACTCACAAAATAGATTTATGCGCGCTCTCCGAAACCAGAAAGAAAGGAAAAGAAACTTCAAAATACCAAGATTTCCTACTCATATACAGCGGAAAAGACAAGGCGAACTATGCTAGTTCAGGAGTGGGCCTTATAATCCACATGAAATTTGAAAAGAGCATAGAAAATATCGAATATATCAACCATAGAATCCTGATGACGACTTTGAATATAGAAAACACTAAACTCCACCTTATATCAGTCTACGCACCAAATATAAGTAAGCCCGAGGGGGAGACCCAAGACTTTTACAATAAACTACAGGATGTCATCGACAAGATACAGAAGAACGAAAATATAATTATTCTTGTAGACCTCAATGCAAGAATAGGAAACGACAGCATAGATAATATCAAACAACGGTTCAACGAAGATACATTGAACCGAAATGGAGAATACCTTGTTGAATTCTGTACCCAAAATTTGTTGAGAATATAA
- Protein Sequence
- MILGFKCEDTLTDENNELKNHLINNQLNQCTTDVRKVTIVEKPFASEKKNFRRHLIVHTAKKLFGCEICTKQFSQSSYLKIHMIRRHNTVEKPFGCEICTKQFVTHNELKLHMTVHTGERPFICEICTKQFSQSSYLKIHMIRRHNTVEKPFGCEICTKQFVTHNELKLHMTVHTGERPFICEICTKQFSRSISLKVHIMRKHNTGQKPFGCEMCTKQFVVHNELKRHMAVHTGEKPFSCEICPKQFSRSSVLKKHLSIHSGEKPFGCEICTKQFSRRNYLKDHMLRIHTDEKPFGCEICTKQFVTHNELKLHMTVHTGERPFSCEICTKQFSKSISLKVHIMRTHNTGQKPFGCEMCTKQFVTHIELKRHMAVHTGEKPFRCEICTKQFLQSSHLKVHMMRSHTGEKPFECEICTKQFVAHSGLKLHMTVHTGERPFRCEICTKQFSQSISLKVHIMRKHNTGQKPFGCEICTKPFVTHIELKRHMAVHTRFKCEENENNELNYLINNQLNQCTTDVRKVTIVEKPFACEKKNLRRHVTVHTEEKSLRCGICTKQFSQNTHLKVHMRRHTGEKLFGCEICTKQFSRSEHLKDHMMRRHTEEKPFGCAICTKQFSSSAHLKKHMVMHSDQKPFGCEICTRQFSQSANLKNHMMRIHTGEKPFGCEICTKQFVTHTEKLNTHKIDLCALSETRKKGKETSKYQDFLLIYSGKDKANYASSGVGLIIHMKFEKSIENIEYINHRILMTTLNIENTKLHLISVYAPNISKPEGETQDFYNKLQDVIDKIQKNENIIILVDLNARIGNDSIDNIKQRFNEDTLNRNGEYLVEFCTQNLLRI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -