g106096.t1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diabrotica virgifera
Gene Symbol
-
Assembly
GCA_003013835.2
Location
ML026373.1:471-12741[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.00033 0.085 16.0 1.2 1 23 166 188 166 188 0.98
2 27 0.0011 0.29 14.3 5.6 1 23 194 216 194 216 0.98
3 27 0.03 7.8 9.8 1.0 1 23 222 244 222 244 0.98
4 27 6e-05 0.015 18.3 2.5 1 23 327 349 327 349 0.98
5 27 0.0018 0.48 13.7 3.2 2 23 369 390 368 390 0.97
6 27 0.07 18 8.7 3.7 1 23 396 418 396 418 0.98
7 27 4e-05 0.01 18.9 4.0 1 23 472 494 472 494 0.99
8 27 8.5e-05 0.022 17.9 0.3 1 23 500 522 500 522 0.98
9 27 0.001 0.26 14.5 2.9 1 23 528 550 528 550 0.98
10 27 5.4e-05 0.014 18.5 0.7 2 23 557 578 556 578 0.95
11 27 0.012 3.2 11.1 4.0 1 21 584 604 584 606 0.94
12 27 1.8e-05 0.0046 20.0 0.9 1 23 613 635 613 635 0.98
13 27 7.7e-06 0.002 21.1 2.4 1 23 641 663 641 663 0.99
14 27 8.7e-05 0.023 17.8 0.5 2 23 670 691 669 691 0.97
15 27 0.0003 0.077 16.1 3.4 1 23 697 720 697 720 0.96
16 27 0.91 2.4e+02 5.2 2.1 1 23 727 749 727 749 0.97
17 27 4.5e-05 0.012 18.7 1.2 1 23 755 777 755 777 0.99
18 27 0.001 0.27 14.5 0.3 2 23 784 805 783 805 0.96
19 27 0.00015 0.038 17.1 3.4 1 21 811 831 811 833 0.96
20 27 0.0021 0.54 13.5 2.5 1 23 840 862 840 862 0.98
21 27 7.7e-06 0.002 21.1 2.4 1 23 868 890 868 890 0.99
22 27 8.7e-05 0.023 17.8 0.5 2 23 897 918 896 918 0.97
23 27 0.00017 0.043 16.9 3.7 1 23 924 947 924 947 0.96
24 27 0.91 2.4e+02 5.2 2.1 1 23 954 976 954 976 0.97
25 27 0.001 0.26 14.5 2.9 1 23 982 1004 982 1004 0.98
26 27 0.00021 0.054 16.6 0.5 2 23 1011 1032 1010 1032 0.95
27 27 0.0015 0.39 13.9 1.1 1 21 1038 1058 1038 1059 0.96

Sequence Information

Coding Sequence
ATGGAATTGGAACATTTACATGAATTAAAACACGAACTCGAACTAGATATATACGAAGATCAACTAGATAAAGTCCATATTGCAGATTTGTTTAAACACGATTCTGAGGAAACTATGTATTTTGAAGATAACCATGTCCAAATTGAGAGTTCCAACCAGACACATATAGAACAACCCTCTGATGATCTGAAAGATGTCCCAAATCATACAGATTATCAGGCAATACTTACTGACAATGTGAAAATGGATCACAACTTAGTTGCAGAAGGAACTGAGAAAGGTTTTCCTTCTTCGATTGTTCAGAAAGATGATATGGACAGTGATATGCTGGAACATCCAACGGGGAAATCACTCCAACGCCATAACAAAAGTGTCAATATTTCAACAAAAATGTTTGTTGAGAACAATCAATTAATTCAAAATATGGATTCCGTGGAAAAGCAGATTATTGCTAAAAACAACAACAGAAACATAAATTTGTCCTTTGAAAAGTCGTTTTCATGTAATGTTTGTTCAATTATATTTACTCTCAAAAGTAGCTTGAGAAAACATTCACTTACTCATGCTGAAGAAACACCTTTTGAGTGCGATATTTGTCATAAAAGATTCAGCCAAAATTCCCAATGTCTTGCACATAGGCAAACACATACAAAAGAGAAACCCTTCAGATGTAGTATTTGCTTTAAGTACTTTAAGGGAGAATCTATCTTAAACGGACATATGAAATTGCACACTGGCTCCAGTATTTTAACAGAAAGCGACCGATCTAACCAACAAGAAGACCTCCATGATGAAGATAATAGTTTAGAATCAATAATGTCGGAGAACATTTCAAATATATCGACAGATAATGATGAATTAACACATAGTATACTTAATATTGAAGAAAACCATATGCAACAAACCAAATTTGATAATCATCTTAAAGAAAAACCCAACCAACGTACGTTTGTGCATAGTAAAGAAACAGACAAACTATTTCAATGCAAAATTTGCTATAAGCGTTTCTCAGTAATAACCAATCTAACACGTCATATATTTAGGCATGCAGACTTAGCTAGATTTAAGAACCGCATACAAAAACGCACTGCAGAACAACAATTAAGGTGTCATATATGCTTTGTGCAATTCACATTTAAAGATAGCCTCAGAAATCATTTACTTAGGCACGTTGGAGAAAAACCTTTTGAGTGTGATATTTGTCGTAaactgttttttcaaaataataattgtattgtACATAGGCGTACACATATAAACGGGAAATCTTTAGAAAAGAAATCACTTGATATTTATTCCAATATGCCTACAGAAATTGATCAGTCAATGGAAAATGTGCCTTTAAATGCCGAAAAAGAATCTTTGCAAAATGTTACATCAGATCATCTTTCTAATGTTTCAAAAGTAGATTCTTTCCAATGCAAATTTTGTTTCAAACAGTTCTCACTACAAACAAATTTAAAACGTCATATACTCACGCACTTGGGAATAAAACCCTTTAAATGCGTTATATGTTTAAAGACATTTTCTTCTCAAATCGCACTAACAGAACACGAGCGCATACATTCTGGAGAAAAACCCTATAAATGTGAATTGTGTGAAAAGGAATTTATATCAAAGTATATCTTCAAGAAACATATGAGATTTCACACAGGCGAAAAACTTATAAAGTGTGATTATTGTCCCCAACAGTTTACAAATAACACAAGTTTGAAGAGACACGTAGTAAGCCACACTAGAGAAAGACCATTTCAATGTATTATTTGTTTTAAGAAATACtcaaacaaaggaaacctggacAGACATATGCGCTGTCACACTGGAGAAAATCGTCAATTTAAATGCACTATATGTTTAAAGACATTTTCTTCACAAATCACACTAACAGTCCATGAGCGCATACATTCTGGAGAAAAACCCTATAAATGTGAATTTTGTGAAAAGGAATTTATATCAAAGGATACCTTCAACAAACATATGAGACTCCACAcaggcgaaaaacttaaaaagtgTGATTATTGTCCCAGACAGTTTATAGATAACACTAGTTTGCAGTTGCACATACTAAGCCACACTGGAGAAAGACCATTCCAGTGTGTTGTTTGTTTCAAAAAGTTTTCAAGAAAAAACAGCCTGAACAAACATAATATGCGTTCCCACACTGGAGAAAATCCTCGATTTAAATGCATTATATGTTTAAAGACATTTTCTTGTCAAATCACACTAACAGACCACGAGCGCATACATTCGGGAGAAAAACCCTATAAATGTGAATTGTGTGAAAAGGAATTTATATCAAAGAACCCCTTCAACAAACATATGAGATTGCACACCGGGGAAAATCTTATAAAGTGTGATTATTGTCCCAGACAGTTTACAGCTAAGACTCAATTTGAGGCACACGTAATAagccatactggagaaaaaccatttCAGTGTGTTGTTTGTTTCAAAAAGTTTGTAACAAAACCAAACCTGGAAAGACATATGCGCTGTCACACTGGAGAAAATCGTCAATTTAAATGCGGTATATGTTTAAACAGATTTTGTACAAAAGACACACTAACAGACCATGAGCGCATACATTCTGGAGAAAAACCCTATAAATGTGAATTTTGTGAAAAGGAATTTATATCAAAGGATACCTTCAACAAACATATGAGACTCCACAcaggcgaaaaacttaaaaagtgTGATTATTGTCCCAGACAGTTTATAGATAACACTAGTTTGCAGTTGCACATACTAAGCCACACTGGAGAAAGACCATTCCAGTGTGTTGTTTGTTTCAAAAAGTTTTCAAGAAAATACAGCCTGAACAAACATAATATGCGTTCCCACACTGGAGAAAATCCTCGATTTAAATGCATTATATGTTTAAAGACATTTTCTTGTCAAATCACACTAACAGACCACGAGCGCATACATTCGGGAGAAAAACCCTATAAATGTGAATTGTGTGAAAAGGAATTTATATCAAAGTATATCTTCAAGAAACATATGAGATTTCACACAGGCGAAAAACTTATAAAGTGTGATTATTGTCCCAAACAGTTTACAGCTAACAGTGAATTTCAGAAACACGTAGTAAGCCATACTGGAGCAGGACCATTTCAGTGTGTTGTTTGTTTCAAGAAGTTTGGAACCAAATCAAACCTGGACGAACATAGACGTTTCCAGTGCTGTATTTCCCATTACGCCAAATACGCAAAGGCGTCAGGCGGCAAAACATAA
Protein Sequence
MELEHLHELKHELELDIYEDQLDKVHIADLFKHDSEETMYFEDNHVQIESSNQTHIEQPSDDLKDVPNHTDYQAILTDNVKMDHNLVAEGTEKGFPSSIVQKDDMDSDMLEHPTGKSLQRHNKSVNISTKMFVENNQLIQNMDSVEKQIIAKNNNRNINLSFEKSFSCNVCSIIFTLKSSLRKHSLTHAEETPFECDICHKRFSQNSQCLAHRQTHTKEKPFRCSICFKYFKGESILNGHMKLHTGSSILTESDRSNQQEDLHDEDNSLESIMSENISNISTDNDELTHSILNIEENHMQQTKFDNHLKEKPNQRTFVHSKETDKLFQCKICYKRFSVITNLTRHIFRHADLARFKNRIQKRTAEQQLRCHICFVQFTFKDSLRNHLLRHVGEKPFECDICRKLFFQNNNCIVHRRTHINGKSLEKKSLDIYSNMPTEIDQSMENVPLNAEKESLQNVTSDHLSNVSKVDSFQCKFCFKQFSLQTNLKRHILTHLGIKPFKCVICLKTFSSQIALTEHERIHSGEKPYKCELCEKEFISKYIFKKHMRFHTGEKLIKCDYCPQQFTNNTSLKRHVVSHTRERPFQCIICFKKYSNKGNLDRHMRCHTGENRQFKCTICLKTFSSQITLTVHERIHSGEKPYKCEFCEKEFISKDTFNKHMRLHTGEKLKKCDYCPRQFIDNTSLQLHILSHTGERPFQCVVCFKKFSRKNSLNKHNMRSHTGENPRFKCIICLKTFSCQITLTDHERIHSGEKPYKCELCEKEFISKNPFNKHMRLHTGENLIKCDYCPRQFTAKTQFEAHVISHTGEKPFQCVVCFKKFVTKPNLERHMRCHTGENRQFKCGICLNRFCTKDTLTDHERIHSGEKPYKCEFCEKEFISKDTFNKHMRLHTGEKLKKCDYCPRQFIDNTSLQLHILSHTGERPFQCVVCFKKFSRKYSLNKHNMRSHTGENPRFKCIICLKTFSCQITLTDHERIHSGEKPYKCELCEKEFISKYIFKKHMRFHTGEKLIKCDYCPKQFTANSEFQKHVVSHTGAGPFQCVVCFKKFGTKSNLDEHRRFQCCISHYAKYAKASGGKT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-