Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML019628.1:40411-46658[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 2.4e-05 0.0061 19.6 1.9 1 23 18 40 18 40 0.99

2 21 0.00024 0.062 16.4 0.9 1 23 45 67 45 67 0.98

3 21 2.6e-05 0.0067 19.5 2.6 1 23 72 94 72 94 0.98

4 21 3.5 9.1e+02 3.3 0.2 1 10 103 112 103 116 0.92

5 21 0.00087 0.23 14.7 3.6 1 23 147 169 147 169 0.98

6 21 1e-05 0.0026 20.8 1.3 1 23 183 205 183 205 0.98

7 21 6.8e-06 0.0018 21.3 1.2 1 23 210 232 210 232 0.98

8 21 0.0001 0.026 17.6 2.3 1 23 237 259 237 259 0.98

9 21 2.4e-05 0.0064 19.6 1.1 1 23 268 290 268 290 0.96

10 21 5.3e-05 0.014 18.5 2.7 1 23 295 317 295 317 0.98

11 21 2.6e-07 6.7e-05 25.8 5.7 1 23 323 345 323 345 0.99

12 21 4.2e-06 0.0011 21.9 0.9 1 23 351 373 351 373 0.98

13 21 0.00049 0.13 15.5 2.6 1 23 379 401 379 401 0.98

14 21 0.0015 0.4 13.9 2.1 1 23 407 429 407 429 0.98

15 21 0.00014 0.036 17.2 2.3 1 23 435 457 435 457 0.98

16 21 2.7e-06 0.0007 22.6 0.8 1 23 463 485 463 485 0.98

17 21 2.4e-06 0.00064 22.7 0.7 1 23 490 512 490 512 0.98

18 21 6.3e-07 0.00016 24.6 0.3 1 23 518 540 518 540 0.97

19 21 9.3e-06 0.0024 20.9 0.8 1 23 546 569 546 569 0.97

20 21 9.9e-07 0.00026 23.9 0.8 1 23 575 597 575 597 0.99

21 21 0.00035 0.092 15.9 4.7 1 23 603 625 603 625 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	2.4e-05	0.0061	19.6	1.9	1	23	18	40	18	40	0.99
2	21	0.00024	0.062	16.4	0.9	1	23	45	67	45	67	0.98
3	21	2.6e-05	0.0067	19.5	2.6	1	23	72	94	72	94	0.98
4	21	3.5	9.1e+02	3.3	0.2	1	10	103	112	103	116	0.92
5	21	0.00087	0.23	14.7	3.6	1	23	147	169	147	169	0.98
6	21	1e-05	0.0026	20.8	1.3	1	23	183	205	183	205	0.98
7	21	6.8e-06	0.0018	21.3	1.2	1	23	210	232	210	232	0.98
8	21	0.0001	0.026	17.6	2.3	1	23	237	259	237	259	0.98
9	21	2.4e-05	0.0064	19.6	1.1	1	23	268	290	268	290	0.96
10	21	5.3e-05	0.014	18.5	2.7	1	23	295	317	295	317	0.98
11	21	2.6e-07	6.7e-05	25.8	5.7	1	23	323	345	323	345	0.99
12	21	4.2e-06	0.0011	21.9	0.9	1	23	351	373	351	373	0.98
13	21	0.00049	0.13	15.5	2.6	1	23	379	401	379	401	0.98
14	21	0.0015	0.4	13.9	2.1	1	23	407	429	407	429	0.98
15	21	0.00014	0.036	17.2	2.3	1	23	435	457	435	457	0.98
16	21	2.7e-06	0.0007	22.6	0.8	1	23	463	485	463	485	0.98
17	21	2.4e-06	0.00064	22.7	0.7	1	23	490	512	490	512	0.98
18	21	6.3e-07	0.00016	24.6	0.3	1	23	518	540	518	540	0.97
19	21	9.3e-06	0.0024	20.9	0.8	1	23	546	569	546	569	0.97
20	21	9.9e-07	0.00026	23.9	0.8	1	23	575	597	575	597	0.99
21	21	0.00035	0.092	15.9	4.7	1	23	603	625	603	625	0.98

Sequence Information

Coding Sequence: ATGAAGTCGCATGATGGTAAAGAACAACGGCCTAATGATGAAGAAAAACCTTTTGAATGTGATGTTTGTTTTAAACGGTTTAAAACTAATTTAGAAGTGAAATCGCATATGAGAACTCATACTGGAGAAACATTTAAGTGTGAACGTTGCCCCAAAGAGTATCTTTCCAATTCTTCTTTAAAATTGCATATGAGATGGCACACCGAAGAAACTTTTTCATGTAAAATATGCTCCAAACAATTTAAAAGAATTTCCAAATTCAAAGCGCATATGGTAACGCATCGTGGAGGGAAAAGAGAAAGGCGTTTCACATGTGTGATTTGCTCTAAAGCATTTTTAAACAAAGGTTCCTCTGAAGAAATACACAATGGTGCTAACAGTGATTTGAACTCGGATAAACGCTTCGTAGAAGAGGACACAAAAACTGTTGATAATCCATTCACTTGTGAAGTTTGCTCCAAACAGTATTTTTTAGAGCATAATTTAAAAAGACATATAAAGTCGCATGATGGTGAAGATAAACGTCATGATGATGAAGAAAAACCGTTTGCATGTGAAGTTTGTTTCAAACGGTTTAAAACTAATGTTGAAGTGAAATCGCATATGAGAACTCATACTGGAGAAACTTTTAAGTGTGAACTTTGCCCCAGAGAGTATTATTCAAATTCTTACTTAAAATCACATATGAGATGGCACACGGGAGAAACATTTTCATGTAAAATATGCTTCAAACAATTTGTAAGAATTTACAAATTCAAAGCGCATATGATAACGCACAGTGAAGGGAAAACGGAAAGACGTTTCGCATGTGTGATTTGCTCCGAAACATTTTCAACCAGTCATAATTTAGCACGACATTCAAGATGGCACACTGGAGAAACTTACACGTGCGAGATTTGCTCCAAACAGTTCGTTGACCGCCATTATTTCAACGTGCATCTGAGATTGCATACGGGCGCAAAACCTTttcagtgtgaaatttgttcgaAACATTTTTCACACAATTCCTCATTAAAGGTGCATATGAGAacacatactggagaaaaacccttCAGCTGTGAAATCTGCTCCAAACCGTATACAACAAGATCGGATTTAAAGGGTCATATGAAACAGCACACTAAAGAATCGCCTTACGAATGCGAAATTTGCCGTAAGAAGTTTGCATCAAGTAGTAGATTAAAATGCCATATGATGGTGCATATGGAAAAAGGTGCTTTCAAGTGTAGAAGTTGCTCGAAACAGTTTGAAACAGATAAAGATCTTCAATTGCATATCAAATCGCACACTGGAGGAGAAACTTTTTCGTGCGAAGTTTGTTCAAAACAATTTTCTACAAATTATTCGTTGAGATTTCATATGCTAACACATAACGAAGAAAAACCCTTCACATGTGACGTTTGCCTCAAAGGATTTTACAGAAATTCTTCGTTAAACCTGCATATGAGGGTGCATACCAATGAATTTTTCCCGTGTGAAGTGTGCcctaaacaatttttaacaaaatcCAACTTAAAGATACATATGAGAAGGCATACAGGAGACAGGCCTTTCCCCTGTGAAGTTTGCCCCAAACGGTTTGCAAAGAAATCTGAGTTAACTTCACACATGAAATGGCACACTAGGGACGTTCTTTTTACATGTGAAGTTTGCAACAAACAGTTTGTTACCAAGACTGTATTAACTAGACATATTATGAGAATTCACACAGCGGAAAAACCAttcaaatgtgaaatttgcaataAACAGTTTGTTACCAACACTGAATTAACTAATCATTTGATAACTCATACGGGGGAAAGACCATTCTCCTGCGAAATTTGCTGCAAACAGTTTATTACCAAAAGATCATTAACCAATCATATGAAAACTCATACGAGGGAAAACCCAATTTAA
Protein Sequence: MKSHDGKEQRPNDEEKPFECDVCFKRFKTNLEVKSHMRTHTGETFKCERCPKEYLSNSSLKLHMRWHTEETFSCKICSKQFKRISKFKAHMVTHRGGKRERRFTCVICSKAFLNKGSSEEIHNGANSDLNSDKRFVEEDTKTVDNPFTCEVCSKQYFLEHNLKRHIKSHDGEDKRHDDEEKPFACEVCFKRFKTNVEVKSHMRTHTGETFKCELCPREYYSNSYLKSHMRWHTGETFSCKICFKQFVRIYKFKAHMITHSEGKTERRFACVICSETFSTSHNLARHSRWHTGETYTCEICSKQFVDRHYFNVHLRLHTGAKPFQCEICSKHFSHNSSLKVHMRTHTGEKPFSCEICSKPYTTRSDLKGHMKQHTKESPYECEICRKKFASSSRLKCHMMVHMEKGAFKCRSCSKQFETDKDLQLHIKSHTGGETFSCEVCSKQFSTNYSLRFHMLTHNEEKPFTCDVCLKGFYRNSSLNLHMRVHTNEFFPCEVCPKQFLTKSNLKIHMRRHTGDRPFPCEVCPKRFAKKSELTSHMKWHTRDVLFTCEVCNKQFVTKTVLTRHIMRIHTAEKPFKCEICNKQFVTNTELTNHLITHTGERPFSCEICCKQFITKRSLTNHMKTHTRENPI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -