g76405.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML017634.1:93735-96032[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00035 0.09 15.9 4.2 1 23 73 95 73 95 0.98 2 22 2.8e-05 0.0072 19.4 1.9 1 23 111 133 111 133 0.99 3 22 1.9e-05 0.005 19.9 1.2 1 23 138 160 138 160 0.98 4 22 6.4e-06 0.0017 21.4 2.3 1 23 165 187 165 187 0.98 5 22 2.3e-05 0.0061 19.6 1.0 1 23 196 218 196 218 0.97 6 22 7.3e-05 0.019 18.1 2.8 1 23 223 245 223 245 0.98 7 22 4e-06 0.001 22.0 4.9 1 23 251 273 251 273 0.99 8 22 5.2e-06 0.0014 21.7 2.6 1 23 279 301 279 301 0.98 9 22 5.3e-06 0.0014 21.7 0.1 1 21 307 327 307 328 0.95 10 22 0.0015 0.39 13.9 3.9 1 23 331 353 331 353 0.98 11 22 6.3e-05 0.016 18.3 0.6 1 23 387 409 387 409 0.98 12 22 5.5e-06 0.0014 21.6 0.4 1 23 414 437 414 437 0.97 13 22 4.5e-06 0.0012 21.9 0.2 1 23 443 465 443 465 0.98 14 22 2.6e-05 0.0067 19.5 0.7 1 23 471 494 471 494 0.97 15 22 6.1e-06 0.0016 21.5 0.8 1 23 500 522 500 522 0.99 16 22 0.0028 0.72 13.1 2.1 1 23 528 550 528 550 0.98 17 22 0.0028 0.72 13.1 2.1 1 23 556 578 556 578 0.98 18 22 2.9e-05 0.0076 19.3 0.9 1 23 584 606 584 606 0.98 19 22 2.4e-05 0.0061 19.6 1.0 1 23 612 634 612 634 0.98 20 22 0.0018 0.48 13.7 2.5 1 23 640 662 640 662 0.98 21 22 0.0016 0.43 13.8 2.9 1 23 668 690 668 690 0.98 22 22 0.0016 0.42 13.8 4.1 1 23 696 718 696 718 0.98
Sequence Information
- Coding Sequence
- ATGACACTTTCCGAATACCGTGTAAATAGCATTGCTTTCACTTCTGCTCCATTCAACCAAAATGAATTCAATTTGGATGAACCGTGTAATTTCGCCTTCACTGATATTTCTGTCTCCTATAGTTCCTCCTCTGAAGAAATACACAATGATGCAAACAGTGATTTGAAATCGAACAAACGCCTGGTAGGAGAGGACACAAAAACTGTTGATACTTCATTCACTTGTGAAATTTGCTCCAAACAGTATTTTTTAGAGCATAATTTAAAAAGACATATGAAGTCGCATGATGGTGAAGACAAACGGCATAATgatgaagaaaaagaaaaaccTTTTGAATGTGACGTTTGTTTTAAACGGTTTAAAACTAATTTAGAAGTAAAATCGCACATGAGAACTCACACTGGAGAAACATTTAAGTGTGAACTTTGCCCCAAAGAGTATTTTTCCAATTATTCTTTAAAATTACATATGAGATGGCACACAGGAGAAACTTTTTCATGTAAAATATGCTCCAAACAATTTGTAAGAAGTTCTAAATTCAACGCACATATGTTAAAACACAGTGAAGGGAGTAAAGAAAGGCGTTTCACATGTGTCATTTGCTCCGAAACATTTTCAACCATTTATAATTTAAGACGACATTCAAGATGGCACACTGGAGAAACTTATACGTGCGAGATTTGCTCCAAACAGTTCGTTGACCGTCATTATTTTAACATCCATTTGAGATTGCATACGGGCGCAAAACCTTttcagtgtgaaatttgttcaaaacatttttcacACAAGTCCGGAGTAAAAGTACATATGAGAacacatactggagaaaaacccttCAGCTGTGAAATCTGCTCAAAACAGTGTGTAACCAGTTCTGATTTAAAGGTTCATATGAGAAAGCACACTAAAGAAGTGCCTTACGAATGCGAAATTTGCCCCAAGAAGTATGCAACAAGTAGTGgattaaaaaaacatatggaaAAACGTCCTTTCAAGTGTGAAACTTGTCTGAGACActataaaacaaataaagatcttCAATTGCATATCAAATTGCACACTGGAGGAGAAACTTTTTCGTGCGAAGTTGGTTCAAAACTTCTTTCTACATATTCTTCGCTGAGAGTTCAATTGAGAACACATACTGAAAGAATACCCTTCACATGCGAAGTTTGCTCCAAAGGATTTTTTAGCAGTGCCACGTTAAAATTACATATGACGGTGCATACGAAAGAACTTTTTCCGTGTGAACTGTGCCCTAAACAATTCATAACAAAATCCAAATTGAAAATACATATTATGAGAATGCATACAGATGACAGGCCTTTCCCCTGTAAAGTTTGCCCCAAACGGTTTGCAGTGAAAAATGAGTTAATTTCACACATGAGATGGCACACTAGAGACGTTCTTTTCACATGTGAAATTTGCAGTAAACAATTCGTTACCAGGACAGTACTAACTAGACATATTATGAGAATTCATACGGCGGAAAAACCAttcaaatgtgaaatttgcaataaacaatttattatCAAGACAGAATTAACTAATCATATGATAACTCATACGGGGGAAAAACCATTCTCCTGCGAAATTTGCTGCAAACAGTTTGTTGTCAAAAGATCATTAACTGATCATATGATAACTCATACGGGGGAAAAACCATTCTCCTGCGAAATTTGCTGCAAACAGTTTGTTGTCAAAAGATCATTAACTGATCATATGATAACTCATACGGGGGAAAACCCATTCTCCTGCGAAATTTGCTACAAACAGTTTGTTGGCAAAAGATCATTAACTAATCATATGATAACGCATACGAGGGGAAAACCATTCTCCTGCGAAATTTGCTACAAACAGTTTGTTGTCAAAAGATCATTAACTAATCATATGATAACTCATACGGGGGAAAAACCATTCTCCTGCGAAATTTGCTGCAAACAGTTTGTTTACAAAATATCATTAAATAATCATATGATAACTCATACGGGGGGAAAACCATTTTCCTGCGAAATTTGCTGCCAACAGTTTGTTACCAAAATATCATTATCTAATCATATGAGAACTCATCCGAGGGAGAAACCATTCTCCTGTGAAATTTGCTGCAAACAGTTCGATATCAAAAGATCATTAAATAGACATATGAGAACTCATACGGAGGAAAACCCAATTCAAACGTGA
- Protein Sequence
- MTLSEYRVNSIAFTSAPFNQNEFNLDEPCNFAFTDISVSYSSSSEEIHNDANSDLKSNKRLVGEDTKTVDTSFTCEICSKQYFLEHNLKRHMKSHDGEDKRHNDEEKEKPFECDVCFKRFKTNLEVKSHMRTHTGETFKCELCPKEYFSNYSLKLHMRWHTGETFSCKICSKQFVRSSKFNAHMLKHSEGSKERRFTCVICSETFSTIYNLRRHSRWHTGETYTCEICSKQFVDRHYFNIHLRLHTGAKPFQCEICSKHFSHKSGVKVHMRTHTGEKPFSCEICSKQCVTSSDLKVHMRKHTKEVPYECEICPKKYATSSGLKKHMEKRPFKCETCLRHYKTNKDLQLHIKLHTGGETFSCEVGSKLLSTYSSLRVQLRTHTERIPFTCEVCSKGFFSSATLKLHMTVHTKELFPCELCPKQFITKSKLKIHIMRMHTDDRPFPCKVCPKRFAVKNELISHMRWHTRDVLFTCEICSKQFVTRTVLTRHIMRIHTAEKPFKCEICNKQFIIKTELTNHMITHTGEKPFSCEICCKQFVVKRSLTDHMITHTGEKPFSCEICCKQFVVKRSLTDHMITHTGENPFSCEICYKQFVGKRSLTNHMITHTRGKPFSCEICYKQFVVKRSLTNHMITHTGEKPFSCEICCKQFVYKISLNNHMITHTGGKPFSCEICCQQFVTKISLSNHMRTHPREKPFSCEICCKQFDIKRSLNRHMRTHTEENPIQT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -