g76410.t1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diabrotica virgifera
Gene Symbol
-
Assembly
GCA_003013835.2
Location
ML017634.1:139598-147924[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00015 0.04 17.0 1.2 1 23 57 79 57 79 0.98
2 22 2.6e-05 0.0067 19.5 1.2 2 23 94 115 93 115 0.97
3 22 6.7e-05 0.017 18.2 0.7 1 23 120 142 120 142 0.98
4 22 0.00015 0.04 17.0 1.2 1 23 180 202 180 202 0.98
5 22 2.6e-05 0.0067 19.5 1.2 2 23 217 238 216 238 0.97
6 22 6.7e-05 0.017 18.2 0.7 1 23 243 265 243 265 0.98
7 22 2.4e-05 0.0061 19.6 3.3 1 23 270 292 270 292 0.98
8 22 0.01 2.7 11.3 3.3 1 23 301 323 301 323 0.98
9 22 6.2e-05 0.016 18.3 2.7 1 23 328 350 328 350 0.98
10 22 2.8e-07 7.4e-05 25.6 6.3 1 23 356 378 356 378 0.99
11 22 2.8e-06 0.00073 22.5 1.2 1 23 384 406 384 406 0.98
12 22 0.00011 0.029 17.5 1.8 3 23 414 434 412 434 0.98
13 22 2.5e-06 0.00066 22.6 1.2 1 23 440 462 440 462 0.99
14 22 4.4e-06 0.0011 21.9 1.4 1 23 468 490 468 490 0.98
15 22 3.5e-05 0.0091 19.1 0.7 1 23 496 518 496 518 0.98
16 22 0.00011 0.029 17.5 1.1 1 23 523 545 523 545 0.98
17 22 3.8e-06 0.001 22.1 0.3 1 23 551 573 551 573 0.98
18 22 0.00015 0.039 17.1 0.8 1 23 579 602 579 602 0.97
19 22 1.2e-05 0.0031 20.5 1.9 1 23 608 630 608 630 0.99
20 22 0.00037 0.097 15.8 3.0 1 23 636 658 636 658 0.98
21 22 0.00042 0.11 15.7 3.4 1 23 664 686 664 686 0.98
22 22 5.1e-07 0.00013 24.8 1.4 1 23 692 714 692 714 0.98

Sequence Information

Coding Sequence
ATGGTAATCATTTCGATTTCATTTGCTACTAGTATGTCATCTACGTATCAAGTTACTGATTTTTGTGCCTTCTATAGTTCCTCTGATGATAAACACAGTGATGCTAACAGTGATTTGAACTCGGACAAACGCTTCGTAGGAGAGGACACAAAAACTGTTGATAATTCATTCACTTGTGCAATTTGTTCCAAACAGTATTCATTAGAACTTAATTTAAAAAGACATATGAAGTCGCATGATGGAAAAGGAAAACAGCGTAATGACAAGGAAAAACGTTTGGAGTGTGAAATATGTTTGAAACGGTTTCGAACTAATTTTGAAGTAAAATCTCATATGCGAACTCATACTGGAGAAACGTTTAAGTGTGAACTTTGCCCCAAAGAGTATTTCTCAAATTATGCTTTAAAATCACATATAAAATGGCACACCGGAGAAACTTTTTCATGTTCCTCTGATGATAAACACAGTGATGCTAACAGTGATTTGAACTCGGACAAACGCTTCGTAGGAGAGGACACAAAAACTGTTGATAATTCATTCACTTGTGCAATTTGTTCCAAACAGTATTCATTAGAACTTAATTTAAAAAGACATATGAAGTCGCATGATGGAAAAGGAAAACAGCGTAATGACAAGGAAAAACGTTTGGAGTGTGAAATATGTTTGAAACGGTTTCGAACTAATTTTGAAGTAAAATCTCATATGCGAACTCATACTGGAGAAACGTTTAAGTGTGAACTTTGCCCCAAAGAGTATTTCTCAAATTATGCTTTAAAATCACATATAAAATGGCACACCGGAGAAACTTTTTCATGTAAAATATGCTTCAAACAATTTATTAGAAGTTCTAAATTCAAAGCGCATATGTTAAAACACAGTGGAGGGAGTAAAGAAAGGCGTTTCACATGTGCGATTTGCTCCGCAACATTTTTACACAAGAAACATTTAGCACGACATTTAAAATGGCACACTGGCGAAACATATACGTGCGAGATTTGCTCCAAACAGTTCGTAGACAATCATTATTACAAAGTACATCTGAGATTGCATACGGGCGCAAAACCTTttcagtgtgaaatttgttcaaaacatttttcacACAAGTCCTCGTTGAAAGTACATATGAGAacacatactggagaaaaacccttCAGCTGTGAAGTTTGCTCCAAACCGTGTATAACAAGTTCGGATTTAAAGGTTCATATGAGAATGCACACTAAAGAAGCGCCTTATGGATGTAAAATTTGCCCTAAGAAGTGCGCAACAAGTAGTAGATTAAAAAGTCATATGATGGTGCATATGAAAGAACATCCTTTTAAGTGTGAAATTTGCCCGAAACAgtataaaacaaataaagatcttCAATTGCATATTAAATCGCACACTGGAAGAGAAACTTTTTCGTGCGAAGTTTGTTCAAAACAATTTTCTACAAATTCTTCGTTGAGCTTGCATATGACAACACATACTGAAAGAATACGCTTCACATGCGAGGTGTGCTCCAAAGGATTTTTCAGCAGTGCTAGTTTAAAAGTACATAAGAGGGTGCATACGAATGAACTTTTCCCGTGTGAAGTGTGCCCTAAACAATTTCtaacaaaatactttttaaaaatacATATGAGAAGGCATACAGGAGACAGGCCTTTCCCCTGTGAAATTTGCTCCAAACGGTTTGCAATGAATTCTGAGTTAACTTCACACATGAAATGGCACACTAGAGACGTTCTTTTCACATGTGAAATTTGCAGTAAACAGTTCGTTACCAAGACAATATTAACTAGACATATTATGAGAATTCATACGGAGGAAAAACCAttcaaatgtgaaatttgcagtAAACAGTTTTTTACCAAGACCGAATTAACTAATCATTTGATAACTCATACGGGGGAAAAACCATTCTCCTGCGAAATTTGCTGCAAAGGGTTTGTTACCAAAAGATCATTAACTAATCATGTGAGAACTCATTCGGTGGAGAAATCATTCTCCTGTGAAATTTGTTGCAAACAGTTTGTTACCAAAAGATCATTAACTAATCATATGATAACTCATACGGAGGAAATACCTTTCTCCTGTGAAATTTGCAACAAACCATTTTTTACCAAAAGATCACTAGCTAATCATATGAGAACTCATACGGGGGAAACCCCAATTCAAATATAA
Protein Sequence
MVIISISFATSMSSTYQVTDFCAFYSSSDDKHSDANSDLNSDKRFVGEDTKTVDNSFTCAICSKQYSLELNLKRHMKSHDGKGKQRNDKEKRLECEICLKRFRTNFEVKSHMRTHTGETFKCELCPKEYFSNYALKSHIKWHTGETFSCSSDDKHSDANSDLNSDKRFVGEDTKTVDNSFTCAICSKQYSLELNLKRHMKSHDGKGKQRNDKEKRLECEICLKRFRTNFEVKSHMRTHTGETFKCELCPKEYFSNYALKSHIKWHTGETFSCKICFKQFIRSSKFKAHMLKHSGGSKERRFTCAICSATFLHKKHLARHLKWHTGETYTCEICSKQFVDNHYYKVHLRLHTGAKPFQCEICSKHFSHKSSLKVHMRTHTGEKPFSCEVCSKPCITSSDLKVHMRMHTKEAPYGCKICPKKCATSSRLKSHMMVHMKEHPFKCEICPKQYKTNKDLQLHIKSHTGRETFSCEVCSKQFSTNSSLSLHMTTHTERIRFTCEVCSKGFFSSASLKVHKRVHTNELFPCEVCPKQFLTKYFLKIHMRRHTGDRPFPCEICSKRFAMNSELTSHMKWHTRDVLFTCEICSKQFVTKTILTRHIMRIHTEEKPFKCEICSKQFFTKTELTNHLITHTGEKPFSCEICCKGFVTKRSLTNHVRTHSVEKSFSCEICCKQFVTKRSLTNHMITHTEEIPFSCEICNKPFFTKRSLANHMRTHTGETPIQI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-