g14028.t1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diabrotica virgifera
Gene Symbol
-
Assembly
GCA_003013835.2
Location
ML015102.1:465104-473359[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0001 0.026 17.6 1.2 1 23 10 32 10 32 0.97
2 25 0.007 1.8 11.8 0.1 2 23 39 61 38 61 0.90
3 25 0.00016 0.04 17.0 2.7 1 23 67 89 67 89 0.98
4 25 3.7e-07 9.6e-05 25.3 3.1 1 23 95 117 95 117 0.99
5 25 0.031 8 9.8 1.4 3 23 125 146 124 146 0.96
6 25 6.9e-05 0.018 18.1 2.9 3 23 176 196 174 196 0.95
7 25 1.3e-05 0.0033 20.5 2.8 1 23 202 224 202 224 0.98
8 25 9.5e-05 0.025 17.7 0.5 1 23 229 251 229 251 0.98
9 25 0.014 3.6 10.9 0.2 2 23 258 280 258 280 0.92
10 25 7.9e-05 0.021 17.9 2.7 1 23 285 307 285 307 0.97
11 25 0.0026 0.69 13.2 2.7 2 23 318 340 317 340 0.96
12 25 7.9e-05 0.021 18.0 0.3 1 23 347 369 347 369 0.98
13 25 4.8e-06 0.0012 21.8 0.2 2 23 376 397 375 397 0.97
14 25 2.9e-07 7.6e-05 25.6 3.1 1 23 403 425 403 425 0.98
15 25 1.5e-05 0.0038 20.3 0.4 1 23 431 454 431 454 0.97
16 25 7.6e-05 0.02 18.0 3.4 3 23 464 484 462 484 0.95
17 25 0.00011 0.029 17.5 4.4 1 23 490 512 490 512 0.97
18 25 9.5e-05 0.025 17.7 0.5 1 23 517 539 517 539 0.98
19 25 0.24 62 7.0 0.3 2 23 546 568 546 568 0.91
20 25 0.00085 0.22 14.7 4.7 1 21 573 593 573 595 0.94
21 25 0.0031 0.81 12.9 1.2 2 23 606 628 605 628 0.96
22 25 7.9e-05 0.021 18.0 0.3 1 23 635 657 635 657 0.98
23 25 4.8e-06 0.0012 21.8 0.2 2 23 664 685 663 685 0.97
24 25 6.2e-07 0.00016 24.6 3.3 1 23 691 713 691 713 0.98
25 25 3.1e-05 0.008 19.2 0.3 1 23 719 742 719 742 0.97

Sequence Information

Coding Sequence
ATGGGATTTAAACATGGCACGAGTCGGTTTGTTTGTAATGTTTGCAATACAACTTGCTACGATAAATCTGCTCTGATTAGTCATATGGGAAGACACAACGATAGCACCAAATCTGTTTGTGAGACGTGTGGCAAGAAATTGTACTCCAAAGTTACTCTTCAGGAGCACATTGTGGCAGTACATCAAGGTCTTAAGCCTCATAAGTGTGACATTTGTGAGCTGTCTTTCGCGAATAGGCTCACTCTCAGGCAACACAAACGCACGCACACTGGTGAAAAGCCTTACACATGTACATATTGTCCTAGAGCCTTTACTCAAAGCCACAGTTTGAAGATTCATCTGAGGACTCACACTGGAGAGAAGCCTGAGATATGCAATATTTGCCAAAGTGGTTTCACTACGAAGACGATATTGAGGACAcatatgaaaaataaacataagcTTGTTGATGGTGGTGTAAAAGTTGAGGTTGATTCAAAAGTTAAAGTCGAATTACTAGAGGACGATATCACCAATCTGCAGTGTTGTGACACTTGTGGAAAGATCTTTCCAGACAAGAGAAAGCTCAAAAAGCACCAAATCTCACATAGTACCTTACGTCCTTACTCCTGTTCTATATGCAAGAAGGCATTCCGCAGAAAGCATGAAGTATCAACCCACATGAACGTCCATAATGGTCTATCTTTCGAATGCGACATTTGCTCGAAAGTCCTAAAGTCCAAAGGATCCTTGATAATCCACAAGAAGAGGCATTTGAAGCTTTTTACAGCTAAATGTGAAGTGTGTGACCAAGGGTTTGTTACCAATCAAGAATATTTGAACCATGTAGGTTCTAAACATGGCAACGCGAATCATGTATGTAATGTGTGTGGTAGAAGCTGTTATGATAAAGCTACACTACAGGGACATATGCAGCGTCACGCTACAGGCTACTCAAACAACTCTGACATCAAATGCGACATTTGCAACAAGACTTTCCTTCAAGAACGTTACTTGAAACACCACTACCAACGAGTACACAAAAATGGCGGCCTGCGTTTTGTCTGCGACCTCTGTGGTAAAAAGGTGAACTCCAAACGCAGCCTCAGGGATCATCTACTCATTCACCAAGGGCTGAAACCTATTGAATGCAAGGAGTGTGGAAGAGGATTTGCTTTAAGGTCCACGCTGAAACTCCACATGCGTGTCCATACTGGAGATAGACCATACGAATGCAAGGAATGTGGCAAATGCTTTACGCAGAAGACACCCTTAACGGTGCATATGCGATACCATACAGGGGAGAGACCTTATAGGTGTACCATATGCGATACTGGATTTGTCAGTAAAGGGGCTTTGAATATTCATCAGAAGAACAAACACAAGGACGAATTCACCAATCTACAGTGTTGTGACACTTGCGGGAAAATATTTCCAAACAAAAGAAAGCTCAAGAAGCATCAGATCTCACATAGTACCGTACGTCCTCACTCCTGTTCTATATGCAAGAAGGCATTTCGCACAAAGCATGAAGTATCGACACACATGAACGTCCATAAAGGTCCATCGTTCGAGTGTGACATTTGCTCGAAAGTGCTGAAGTCCAAAGGATCCTTGATAATCCACAAGAAAAGGCACTTGAAGCTTTTTATGGCAAAATGCGAAGCTTGTAACCAAGGTTTTGTTACCAATCAAGAATACCTGAACCACGTAGGTTCTAAACATGGTAATGCAAATCATGTATGTAATGTGTGTGGTAGAAGCTGTTATGATAAAGCCGGATTACAAAGACATATGCAGTGTCATGCTATTGGATACTCAAACAACTCTGACATCAAATGCGAGATTTGCACCAAAACTTTCCTTCAAGAACGTTACTTGAAGCAACACTACCAACGAGTACACAAAAATGGCGGCCTGCGCTTTGTTTGCGACTTATGTGGCAAAAAAGTTAACTCCAAACGCAGCCTCAGGGACCATCTGCTCATTCACCAGGGCCTGAAACCTATTGAGTGCAAAGAGTGTGGAAGAGGATTTGCTTTGAGGTCAACGTTGAAGCTGCACATGCGCGTCCATACTGGAGACAGACCATACGAATGCAAAGAATGTGGCAAATGCTTTACGCAGAAGACACCGCTGACTGTGCATATGCGGTTCCATACAGGAGAGAGGCCCTATATGTGCACCATATGCGACACTGGATTTGTCAGTAAAGGGGCTTTGAACATTCATCAGAAAAACAAACATAGTACAGCATAG
Protein Sequence
MGFKHGTSRFVCNVCNTTCYDKSALISHMGRHNDSTKSVCETCGKKLYSKVTLQEHIVAVHQGLKPHKCDICELSFANRLTLRQHKRTHTGEKPYTCTYCPRAFTQSHSLKIHLRTHTGEKPEICNICQSGFTTKTILRTHMKNKHKLVDGGVKVEVDSKVKVELLEDDITNLQCCDTCGKIFPDKRKLKKHQISHSTLRPYSCSICKKAFRRKHEVSTHMNVHNGLSFECDICSKVLKSKGSLIIHKKRHLKLFTAKCEVCDQGFVTNQEYLNHVGSKHGNANHVCNVCGRSCYDKATLQGHMQRHATGYSNNSDIKCDICNKTFLQERYLKHHYQRVHKNGGLRFVCDLCGKKVNSKRSLRDHLLIHQGLKPIECKECGRGFALRSTLKLHMRVHTGDRPYECKECGKCFTQKTPLTVHMRYHTGERPYRCTICDTGFVSKGALNIHQKNKHKDEFTNLQCCDTCGKIFPNKRKLKKHQISHSTVRPHSCSICKKAFRTKHEVSTHMNVHKGPSFECDICSKVLKSKGSLIIHKKRHLKLFMAKCEACNQGFVTNQEYLNHVGSKHGNANHVCNVCGRSCYDKAGLQRHMQCHAIGYSNNSDIKCEICTKTFLQERYLKQHYQRVHKNGGLRFVCDLCGKKVNSKRSLRDHLLIHQGLKPIECKECGRGFALRSTLKLHMRVHTGDRPYECKECGKCFTQKTPLTVHMRFHTGERPYMCTICDTGFVSKGALNIHQKNKHSTA*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-