g44383.t1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diabrotica virgifera
Gene Symbol
-
Assembly
GCA_003013835.2
Location
ML015760.1:251294-253540[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.17 45 7.4 1.9 2 23 24 45 23 45 0.97
2 25 2.2e-05 0.0058 19.7 1.4 1 23 51 73 51 73 0.99
3 25 3.7e-06 0.00096 22.1 0.9 1 23 107 129 107 129 0.99
4 25 3.7e-05 0.0095 19.0 3.5 2 23 136 157 135 157 0.98
5 25 0.0058 1.5 12.1 1.8 1 17 163 179 163 185 0.93
6 25 7.3e-05 0.019 18.1 2.8 2 23 192 213 191 213 0.98
7 25 4.2e-06 0.0011 22.0 0.5 1 23 219 241 219 241 0.99
8 25 0.031 8 9.8 4.5 1 18 247 264 247 264 0.96
9 25 7.1e-06 0.0018 21.3 1.4 2 23 276 297 275 297 0.97
10 25 0.00014 0.037 17.1 3.0 1 23 303 325 303 325 0.99
11 25 5.7e-06 0.0015 21.5 2.4 1 23 331 353 331 353 0.99
12 25 2.5e-05 0.0065 19.5 1.6 1 23 359 381 359 381 0.99
13 25 1.3e-05 0.0033 20.5 1.7 1 23 387 409 387 409 0.99
14 25 7.8e-05 0.02 18.0 2.5 1 23 415 437 415 437 0.99
15 25 8.7e-06 0.0023 21.0 1.5 1 23 443 465 443 465 0.99
16 25 7.8e-05 0.02 18.0 2.5 1 23 471 493 471 493 0.99
17 25 8.7e-06 0.0023 21.0 1.5 1 23 499 521 499 521 0.99
18 25 0.0008 0.21 14.8 3.3 1 23 527 549 527 549 0.98
19 25 3.9e-07 0.0001 25.2 0.6 1 23 555 577 555 577 0.99
20 25 7.1e-07 0.00018 24.4 1.1 1 23 583 605 583 605 0.99
21 25 1e-05 0.0027 20.7 4.9 1 23 611 633 611 633 0.99
22 25 8.9e-07 0.00023 24.1 1.2 1 23 639 661 639 661 0.98
23 25 3.5e-05 0.009 19.1 2.0 1 23 667 689 667 689 0.99
24 25 0.00088 0.23 14.7 1.3 1 23 695 717 695 717 0.98
25 25 0.00018 0.048 16.8 0.4 1 23 723 746 723 746 0.97

Sequence Information

Coding Sequence
ATGAAAACAATACCTGTAAACCCATCTAAAAAGGAACGTATAAGTCAATCCGCTAAAGAAAACCCAATACAATGTGAAATGTGTTTTCGGCGATTTACTTGTATAAGTTCCTTAGCTGAGCATACGAAAATTCACagtggagaaaaaccttacaagtgcgacATTTGTTTTGGGAGGTTTTCTCATGCAGATGCTTTGAAACAACATATAAGATCGCACCCTGGAGAAAAACCTAACAAAAGTCAAATGGGCTGTAAGCTGTCTTCTCAGGCAGATTCTTTGCAACAACATGTAACTTCTAACAATGCAGAAAAACGATACAAGTGCGAAGTTTGTTTGAAGCACTTTGGTCAAGCATCTGATTTGATACAACATATAAGAACGCATACTGAAGAAAAATCTAACAAGTGTCAAATGTGCTTTAAGCAGTTTACGCATGCAGATGATTTGAAACAACATATAAGGTCGCACACTGAAGAAAAAcgttacaagtgcgaaatttgttctAAACATTTTTGTCGAGCATTTCAATTGAAACAACTTATAAGAATGCACACTGAAGAAAAACATAACAAGTGTCAAAtatgttttaagcagttttctcatGAAGGTTCTTTGAAAGAACATATAAGATCACATACTCTAGAAAAACGATACAAGTGCGAAGTTTGTCTTAAAGTCTTTGGTCAAGCATCTGATTTGAAACAACATACAAGATCGCACTCTGGAGAAAAGCGTTACAAATGTAAAGTTTGTTCTAAGCATTTTTGTCGAGCATTTCAATTGAAACGACTTATAAGAATGGACACTGAAGAAAATCTTAAAGAGTGTCAAAtatgttttaagcagttttctaaGGCAAGTTCTTTGAAAGAACATATAAGAACGCACACTGAACAAAAATCTTACAAGTGTCAGATGTGCTGTAAGCAGTTTTCTCAGGCAGATTCTCTGGAACAACATATAAGATCGCACCCTGGAGAACAACGTTACAAGTGCGAAGTTTGTTTTAAGCACTTTGGTCAAGCATCTGATTTAAAACAACATGTAAGAACGCACACTgaagaaaaaccttacaagtgccaAATATGTTTTAAGCAATTTTCTCAGGCAGGTTTCTTGAAAGAACATATGAGCTCGCATATTAAAGAAAAACGCTTTAAGTGCGAAGTTTGTTTTAAGCACTTTGGTCAGGCACCTGATTTGAAACAACATATAAGAACGCACACTGAacaaaaaccttacaagtgtgaaatgtgCTGTAAGCAGTTTTCTCAGGCAGATTCTTTGGAACAACATATAAGATCGCACCCTGGAGAACGACGTTACAAGTGCGAAGTTTGTTTTAAGCACTTTGGTCAAGCACCTGATTTGAAACAACATATAAGAACGCACACTGAacaaaaaccttacaagtgtgaaatgtgCTGTAAGCAGTTTTCTCAGGCAGATTCTTTGGAACAACATATAAGATCGCACCCTGGAGAACGACGTTACAAGTGCGAAGTTTGTTTTAAGCACTTTGGTCAAGCACCTGATTTGAAACAACATATAAGAACTCACACTGAACAAAAATCTTACAAGTGTCAGGTGTGCTGTAAGCAGTTTTCTCAGGCGGATTCTTTGAAACAACATATAACATCGCACACTGAAGAACAGcgttacaagtgcgaaatttgttttaagatcTTTGGTCAAGCATCTGATTTAAAACAACATATAAGAACCCACACTGAacaaaaaccttacaagtgtcaGATGTGCTCTAAGCAGTTTTCTCAGGCAGATTCTTTGGAACAACATATAAGATCGCACCCTGGAGACCAACggtacaagtgcgaaatttgttttaagcactTTGGTAAAGCATCTGATTTGAAACACCATATAAGAACGCATACTGAAGAAAAACGTTACACGTGCCAAATATGTTCTAAGCAATTTTCTCAGGCAAGCTCCTTGAAAGAACATATGAGCTCGCATATTAGAGAAAAACGTTTCAAGTGCGAAGTTTGTTTTAAGCACTTTGGTCAAGTATCTGGTTTAAATCAACATATAAGAACGCACACTGAacaaaaaccttacaagtgtcaGATATGCTGTAAGCAGTTTTCTCAGGCAGATTCTTTGGAAGATCATGTAATATCGCACACTGGGAAAAAACGCTACAAGTGCTACATATGTTTTGAGCAGTTTTCTCGGGAAGGTTCTTTAATGCAGCATATAATCTCTGAGCATATGAAATAA
Protein Sequence
MKTIPVNPSKKERISQSAKENPIQCEMCFRRFTCISSLAEHTKIHSGEKPYKCDICFGRFSHADALKQHIRSHPGEKPNKSQMGCKLSSQADSLQQHVTSNNAEKRYKCEVCLKHFGQASDLIQHIRTHTEEKSNKCQMCFKQFTHADDLKQHIRSHTEEKRYKCEICSKHFCRAFQLKQLIRMHTEEKHNKCQICFKQFSHEGSLKEHIRSHTLEKRYKCEVCLKVFGQASDLKQHTRSHSGEKRYKCKVCSKHFCRAFQLKRLIRMDTEENLKECQICFKQFSKASSLKEHIRTHTEQKSYKCQMCCKQFSQADSLEQHIRSHPGEQRYKCEVCFKHFGQASDLKQHVRTHTEEKPYKCQICFKQFSQAGFLKEHMSSHIKEKRFKCEVCFKHFGQAPDLKQHIRTHTEQKPYKCEMCCKQFSQADSLEQHIRSHPGERRYKCEVCFKHFGQAPDLKQHIRTHTEQKPYKCEMCCKQFSQADSLEQHIRSHPGERRYKCEVCFKHFGQAPDLKQHIRTHTEQKSYKCQVCCKQFSQADSLKQHITSHTEEQRYKCEICFKIFGQASDLKQHIRTHTEQKPYKCQMCSKQFSQADSLEQHIRSHPGDQRYKCEICFKHFGKASDLKHHIRTHTEEKRYTCQICSKQFSQASSLKEHMSSHIREKRFKCEVCFKHFGQVSGLNQHIRTHTEQKPYKCQICCKQFSQADSLEDHVISHTGKKRYKCYICFEQFSREGSLMQHIISEHMK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-