Basic Information

Insect: Diabrotica virgifera
Gene Symbol: -
Assembly: GCA_003013835.2
Location: ML015363.1:1-24071[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 6.1e-05 0.016 18.3 2.1 1 23 26 48 26 48 0.97

2 29 0.025 6.4 10.1 0.2 3 23 56 76 54 76 0.97

3 29 2.8e-07 7.2e-05 25.7 1.3 1 23 82 104 82 104 0.98

4 29 0.00028 0.072 16.2 2.4 2 23 111 132 110 132 0.95

5 29 0.00012 0.03 17.4 2.7 1 23 138 161 138 161 0.97

6 29 3.3e-05 0.0086 19.1 1.2 1 23 167 189 167 189 0.97

7 29 2.3e-06 0.00059 22.8 1.8 1 22 195 216 195 219 0.92

8 29 5.9e-07 0.00015 24.6 3.8 1 23 246 268 246 268 0.99

9 29 0.032 8.4 9.7 3.2 1 23 278 301 278 301 0.92

10 29 9.7 2.5e+03 1.9 1.2 2 20 328 346 327 347 0.92

11 29 0.019 5 10.4 1.1 2 23 383 404 382 404 0.96

12 29 2.1e-05 0.0056 19.7 0.2 1 23 437 459 437 459 0.96

13 29 0.00014 0.035 17.2 2.8 1 23 592 615 592 615 0.95

14 29 0.0001 0.027 17.6 1.1 1 23 621 643 621 643 0.97

15 29 9.5e-07 0.00025 24.0 1.8 1 23 649 671 649 671 0.98

16 29 0.00055 0.14 15.3 1.2 2 23 678 699 677 699 0.97

17 29 4.8e-05 0.013 18.6 6.6 1 23 705 727 705 727 0.98

18 29 0.00033 0.085 16.0 2.1 1 23 733 755 733 755 0.98

19 29 4.2e-07 0.00011 25.1 0.9 1 23 761 783 761 783 0.98

20 29 0.00024 0.062 16.4 2.0 2 23 790 811 789 811 0.97

21 29 0.00019 0.05 16.7 2.6 1 23 817 839 817 839 0.97

22 29 6e-06 0.0016 21.5 1.3 1 23 845 867 845 867 0.98

23 29 9e-07 0.00023 24.1 2.4 1 23 873 895 873 895 0.98

24 29 1.2e-05 0.003 20.6 1.1 3 23 902 922 901 922 0.98

25 29 0.0028 0.74 13.1 1.8 1 23 935 957 935 957 0.98

26 29 0.67 1.7e+02 5.6 0.2 2 23 964 985 963 985 0.96

27 29 0.0026 0.68 13.2 2.6 1 23 1006 1028 1006 1028 0.97

28 29 0.0056 1.5 12.1 0.3 2 23 1055 1076 1054 1076 0.95

29 29 4e-05 0.011 18.9 0.4 1 23 1109 1131 1109 1131 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	6.1e-05	0.016	18.3	2.1	1	23	26	48	26	48	0.97
2	29	0.025	6.4	10.1	0.2	3	23	56	76	54	76	0.97
3	29	2.8e-07	7.2e-05	25.7	1.3	1	23	82	104	82	104	0.98
4	29	0.00028	0.072	16.2	2.4	2	23	111	132	110	132	0.95
5	29	0.00012	0.03	17.4	2.7	1	23	138	161	138	161	0.97
6	29	3.3e-05	0.0086	19.1	1.2	1	23	167	189	167	189	0.97
7	29	2.3e-06	0.00059	22.8	1.8	1	22	195	216	195	219	0.92
8	29	5.9e-07	0.00015	24.6	3.8	1	23	246	268	246	268	0.99
9	29	0.032	8.4	9.7	3.2	1	23	278	301	278	301	0.92
10	29	9.7	2.5e+03	1.9	1.2	2	20	328	346	327	347	0.92
11	29	0.019	5	10.4	1.1	2	23	383	404	382	404	0.96
12	29	2.1e-05	0.0056	19.7	0.2	1	23	437	459	437	459	0.96
13	29	0.00014	0.035	17.2	2.8	1	23	592	615	592	615	0.95
14	29	0.0001	0.027	17.6	1.1	1	23	621	643	621	643	0.97
15	29	9.5e-07	0.00025	24.0	1.8	1	23	649	671	649	671	0.98
16	29	0.00055	0.14	15.3	1.2	2	23	678	699	677	699	0.97
17	29	4.8e-05	0.013	18.6	6.6	1	23	705	727	705	727	0.98
18	29	0.00033	0.085	16.0	2.1	1	23	733	755	733	755	0.98
19	29	4.2e-07	0.00011	25.1	0.9	1	23	761	783	761	783	0.98
20	29	0.00024	0.062	16.4	2.0	2	23	790	811	789	811	0.97
21	29	0.00019	0.05	16.7	2.6	1	23	817	839	817	839	0.97
22	29	6e-06	0.0016	21.5	1.3	1	23	845	867	845	867	0.98
23	29	9e-07	0.00023	24.1	2.4	1	23	873	895	873	895	0.98
24	29	1.2e-05	0.003	20.6	1.1	3	23	902	922	901	922	0.98
25	29	0.0028	0.74	13.1	1.8	1	23	935	957	935	957	0.98
26	29	0.67	1.7e+02	5.6	0.2	2	23	964	985	963	985	0.96
27	29	0.0026	0.68	13.2	2.6	1	23	1006	1028	1006	1028	0.97
28	29	0.0056	1.5	12.1	0.3	2	23	1055	1076	1054	1076	0.95
29	29	4e-05	0.011	18.9	0.4	1	23	1109	1131	1109	1131	0.96

Sequence Information

Coding Sequence: NGTGTTCATTCTCTAGTTGTTGTAAAGGATGATGTGGTTGGTGATATGTTGGAGGAGGATCAAGTAGAGAAGCCATTCCAATGCACACTTTGTCCGAAACAATTCAAAAAAAAGATAAGCCTTAATCGCCATTTATTTGTCCACAAAGGAATAAAACGCTTCGGATGTGAGATGTGTTCAAGCAAATTCGCAACAAAAGCATCTCTTATTTATCATGTTCGAGCTCATAACGGAGAGAGACCTTTTGAATGTAAAGTTTGTCCGCGACAGTTCAGAAACAATAGTTTATTGAACAGACATATGAGGTTACACACTGGTGAAAACCTGCTAAAATGTGAATATTGttccaaaaagtttataagaaaCTGTCAGCTTCAAATTCATTTACTTGGGCATGCTGAGGAAAAACCATTCAAATGCACAATTTGCTTTACACAGTTCGCAACAAAGACCAATCTTAATCGCCATTTTTTAACGTTGCACAAAGGCATAAAAGAGTTCTATTGCAGGATCTGTGAGAAAAGATTCACATCAAAGGATTCTCTCATTTATCATGTTCGAGCTCATTATGGAGACAAACCTTTTAAATGTAAAGTTTGTCCCCAGCAGTTTAGAAACAAGAGTTTATTGAACAAACATATGAGGTTATCGTTGcacaaagaaaaaaaatctttCGAAAGTCATGAAAATACCACCTTAGCTACACATATGAGGCTGCACACAGAAGAAAAGATTTTCAAATGTGACAAATGCCCCAAAGAGTTCACAAAAAAATACCAACTTCAGAGACACTTACGTAGGCATCTAAAAAAGCACGTTGGGAACAAACCTTTTGAATGTGATctttgcaataaaaaattcagTCATAATGATGAATGCATACTACACAGAAGTGTAGTTCATTCATTAGGCTCTCtagaacaattttttaaagaacCACAAAAGTTGAATCTTCAAATGAAAGTTCATCTAGACGggttaaaatgttatatttgtTCCCAATTGTTTACAGAAGATAATCAGTTGGCGCAACATAAATGTTGCATACTACACAGAAGTGTAGTTAATTCATTAGGTTCTCTAGAACAGGTTTTTAAAGACCCACAAAAGTTGAATCTTCAAATGAAAGTTCATCTAGACAggttaaaatgttatatttgtTCCCAAGTGTTTACAGAAGATGATCAGTTGGCGCAACATAAATGTATTCACATTGAAGAACCTCAGCAATGTATTGTTGATTctcaaaaaattaaacaaatagatAGTTCCATTGAACATTTACGATGCCACATAAAAGAAACATTTTTCAAATGTAACATTTGCTCTGAAGAATTTATAGACAGCGATCAATTAACTCAACATATGGTGCTACATACAGAAGAAAAAGTTTTGCAACAAATCGCATGTCATACTAGTTCCCGTATGTCTCCAGAAACTGATCAAACAACAGATGAAAAACAAcaccaatatttatttaaaaataaacctGGAAATGTATCTTTTCAATCTACCGACGGAGAAGATCAAATAAAATCTAAGTATCATTCGAACGAAATACTGACAGAACAATGCAATAATGATCTGAAATTTGAGATAAATGAAACTGATTTAAAATATCAGATCCTACATACTGAAGACGTGAAATTTGAGCCAAATGGAATGGATGATAACTCAAAAGATCCAGAAAGAAATGAAAAAGGTGTTCATTCTCTAGTTGCTGTAAACGATAGTGTGATTGGTGATATGTTGGAGGATGGAGGAGAAAAGCCGTTCCAATGCAAAATTTGCTTTAAACAGTTCTCATCAAGGACCACTCTTAATCGCCATTTTTTAGTGTTGCACAAAGGCATAAAAAATTTCTATTGCAGGATCTGTGTTAAAAGATTCACAACAAAGGATTCTCTCATTTATCATGTTCGAGCTCATTATGGAGACACACCTTTTAAATGTAATGTTTGTCCACGGCAGTTCAGAAACAAAAGTGCATTGAACAGACATACAAGGTTACACACTGGTGAAAACCTTCTAAAATGTGAATATTGTCCTAAACAGTTTACAATCAATTTTCTATTTCAAAATCATTTACGTTTGCATACTGAGGGAAAACCGTTCAAATGCACCATTTGCTTTAAACATTTCACAACAAAGACCAATCTTAACCGCCATTTATTTAGCCACAAAGGAATAAAGCCTTTCGAATGTGGGGTGTGTTCAAAAAAATTCACAGCAAAAACTACTCTCATTCATCATACTCGAATTCATTCTGGAGAGACACCTTTTAAATGCAAAATCTGTCCAAAACAGTTCAAAGACAAGGGTTCACTGACCATTCATATAAGGTTACACACTGGTGAAAACCTTCTAAAATGCGAATATTGTTCTAAACAGTTTGCAGAAAACTATAAATTTCAAAGACATTTACGGTTGCATGCTGGGGAAAAACCATTCAAATGCACCATTTGCTTTACACAGTTCACAACAAACGCCAGTCTTAATCGCCATTTATTTAACCACAAAGGAATAAAACCCTTCGAATGTGGGGTTTGTTCAAAGAGATTCACAACAAAAACATCTCTCATTTACCATATTCGAAGTCATTCTGGAGAAACACCTTTCAAATGTAAAATTTGTCCAAAACAGTTCAGAGACAAGAGTAGTATGAATAGACATTTGAGGTTACATTCTAGTGAAAACCTTCTATGTGAATATTGCGCTAAGCAGTTTACAAGAAACTCTGACTTACAAAGACATTTAAGTACGCACAGACCATTTGAATTGGAGACCATTGGAGACAAGTCATTTGAATGTGATATTTGTTATAAAAAGTTTTGGGATAATGATCAATTCCTCACACATAAACGTACACATACCATTGAAAATTCTGTTAAGTGTCAAATTTGTTTTGAGGATTTTGCGGAAAATACCATTTTGGATACACATATGAGGCTGCACACAGAAGAAAAAAGTGGCATATTACGTACGTATCTACAGAAACCCGTTGAAGACAAACCTTTTGAATGTGATATTTGCGATAAAAAATTCAGTAATAATAACGAATGCATACTGCACAGAAGTACACATACAACAGATTCTCCAGGACAAGTTTTTATTGATCCACAAAAATTGAATCTTCAAATGAAAGTTCATCTAGACAAGTTAAAATGTGGTATTTGTTCCCAGGAGTTTACAGAAAATGATCAACTGGCGCAACATAAATTTGTACACATTGAAGAACCTCAGCAATATATTGTTGATTCTCTAGAATTTCAACAAATAGATAGTTCTATTGAAAATTTACAATGCCACAtaaaagaaacattttttaaatgtaacatttGCTCTGAAGAATTTACAGAAAGTGATCAATTAACTCAACATATGGTGCTACATGCAGAAGAAACAGTTTTACAACAAATCGCCTGTGATACTAGTTCCCGCATGTCTCCAGAAACTGATCAGACAACAGCAACGTTTCGTTCGCCTAGAAAAGTTCCGGATATGGAACATGAGATAGAGAGGTTTAGTGGGTATTACAAGTACAGAGTCTCACACTACCTTAGAGCGAAAGACTAG
Protein Sequence: XVHSLVVVKDDVVGDMLEEDQVEKPFQCTLCPKQFKKKISLNRHLFVHKGIKRFGCEMCSSKFATKASLIYHVRAHNGERPFECKVCPRQFRNNSLLNRHMRLHTGENLLKCEYCSKKFIRNCQLQIHLLGHAEEKPFKCTICFTQFATKTNLNRHFLTLHKGIKEFYCRICEKRFTSKDSLIYHVRAHYGDKPFKCKVCPQQFRNKSLLNKHMRLSLHKEKKSFESHENTTLATHMRLHTEEKIFKCDKCPKEFTKKYQLQRHLRRHLKKHVGNKPFECDLCNKKFSHNDECILHRSVVHSLGSLEQFFKEPQKLNLQMKVHLDGLKCYICSQLFTEDNQLAQHKCCILHRSVVNSLGSLEQVFKDPQKLNLQMKVHLDRLKCYICSQVFTEDDQLAQHKCIHIEEPQQCIVDSQKIKQIDSSIEHLRCHIKETFFKCNICSEEFIDSDQLTQHMVLHTEEKVLQQIACHTSSRMSPETDQTTDEKQHQYLFKNKPGNVSFQSTDGEDQIKSKYHSNEILTEQCNNDLKFEINETDLKYQILHTEDVKFEPNGMDDNSKDPERNEKGVHSLVAVNDSVIGDMLEDGGEKPFQCKICFKQFSSRTTLNRHFLVLHKGIKNFYCRICVKRFTTKDSLIYHVRAHYGDTPFKCNVCPRQFRNKSALNRHTRLHTGENLLKCEYCPKQFTINFLFQNHLRLHTEGKPFKCTICFKHFTTKTNLNRHLFSHKGIKPFECGVCSKKFTAKTTLIHHTRIHSGETPFKCKICPKQFKDKGSLTIHIRLHTGENLLKCEYCSKQFAENYKFQRHLRLHAGEKPFKCTICFTQFTTNASLNRHLFNHKGIKPFECGVCSKRFTTKTSLIYHIRSHSGETPFKCKICPKQFRDKSSMNRHLRLHSSENLLCEYCAKQFTRNSDLQRHLSTHRPFELETIGDKSFECDICYKKFWDNDQFLTHKRTHTIENSVKCQICFEDFAENTILDTHMRLHTEEKSGILRTYLQKPVEDKPFECDICDKKFSNNNECILHRSTHTTDSPGQVFIDPQKLNLQMKVHLDKLKCGICSQEFTENDQLAQHKFVHIEEPQQYIVDSLEFQQIDSSIENLQCHIKETFFKCNICSEEFTESDQLTQHMVLHAEETVLQQIACDTSSRMSPETDQTTATFRSPRKVPDMEHEIERFSGYYKYRVSHYLRAKD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -