g51850.t2
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- X-element\ORF2
- Assembly
- GCA_003013835.2
- Location
- ML016034.1:299133-320591[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00014 0.035 17.2 0.3 1 23 131 153 131 153 0.95 2 24 0.38 1e+02 6.4 0.2 8 23 166 182 165 182 0.92 3 24 4 1e+03 3.2 0.5 1 14 188 201 188 202 0.84 4 24 0.0062 1.6 12.0 0.0 5 23 368 386 367 386 0.94 5 24 2.1e-06 0.00054 22.9 0.4 1 23 419 441 419 441 0.97 6 24 1.9e-06 0.0005 23.0 2.6 1 23 447 469 447 469 0.97 7 24 2.4e-06 0.00062 22.7 0.3 1 23 475 497 475 497 0.98 8 24 4.1e-07 0.00011 25.2 0.6 1 23 503 525 503 525 0.98 9 24 0.00012 0.031 17.4 0.4 5 23 535 553 534 553 0.97 10 24 5.7e-07 0.00015 24.7 1.2 1 23 559 581 559 581 0.98 11 24 1.3e-06 0.00033 23.6 0.6 1 23 587 609 587 609 0.98 12 24 1.6e-07 4.2e-05 26.4 0.6 1 23 615 637 615 637 0.98 13 24 1.3e-06 0.00033 23.6 0.6 1 23 643 665 643 665 0.98 14 24 1.6e-07 4.2e-05 26.4 0.6 1 23 671 693 671 693 0.98 15 24 1.3e-06 0.00033 23.6 0.6 1 23 699 721 699 721 0.98 16 24 1.6e-07 4.2e-05 26.4 0.6 1 23 727 749 727 749 0.98 17 24 0.0015 0.38 14.0 0.7 7 23 761 777 755 777 0.85 18 24 2.2e-07 5.6e-05 26.0 0.3 1 23 783 805 783 805 0.98 19 24 2.2e-07 5.6e-05 26.0 0.3 1 23 812 834 812 834 0.98 20 24 2.2e-07 5.6e-05 26.0 0.3 1 23 841 863 841 863 0.98 21 24 9.5e-06 0.0025 20.9 1.6 1 23 870 892 870 892 0.98 22 24 0.00013 0.034 17.3 2.1 1 23 898 920 898 920 0.97 23 24 0.00013 0.034 17.3 2.1 1 23 926 948 926 948 0.97 24 24 1.5e-05 0.0039 20.2 2.3 1 23 954 976 954 976 0.97
Sequence Information
- Coding Sequence
- ATGGGTGAACCAGAGATATTAGAACGCTGGAAGGAGTACTTTGATGAGCTTCTAAATGGACCTGAGCAGACAGACGATAATAACGAGGAAACAATGGATCTagtaaatgaaatacaaaatcaACAGAGTGAAGAGCAGGCTCCGACTATAAGCGAAATTCAGAATATCATCGATAAACTAAAAatgaacaaaagcccaggaagTGACTGCATAACGGCTGAAATGATTAAATTTGGAGGAAATCAGCTAGTAGATAAAATCCCGAAACTAATTAATGATATATGGGAACAAGAAATACTACCTGAGGAATGGACAGAAGCAATACTATGTCCTATTCACAAAAAAGGAAATATGGCTGATTGTCAGAATTATCGAGGTTTTCCCCATGGTTTTCCATGTGAAATCTGCTCCGAACTATTTTCACAAAGATCCATGTTGAAACAACATATGGGACTACACACTGAAGATAAGCCTTTTGCTGGTGAAATTCGTGCCAAAAACTTTTCGCAAAATTCCCATTTAAATGGACATATTATGGCAATACACACTGGCGATAAACCTTTTGCATGTATAATTTGCTCCAAGAGTTTTTCACAACGATCCAGaaaaaaatactcAACAACTAAAGCTTTATTAGAAGTAATAGAACATATTGTTCACGGTCTTGATGCAGGTGAACCTACTAATGGTTTAATGTGTGACCTTAcaaaagcttttgattgtgtggaTATTCaaacactattgataaaattggAGTACTATGGAATAAGGGGTACCATACACGAACTTTTAAAATCATATCTTACAGGAAGAACACAGATTGTTGCATTTAATAATCAAGAATCTAATCCTTTACCAGTTTCAActggagtaccacaaggatcagttttGGGACCTCTGCTATTCTTGATATATATAAATGATTTACCAAGTGCGTTGGATAATACCAACTGTGTTCTTTTTGCAGATGACACAACCTTATTATGTAGAGGTTTTCCCCATGGTTTTTCATGTGAAATTAGCTCCGAATTATTATCACAATCATCCATTTTCAAAGAACATATGGAACTAGACACTGAAGATAAGCCTTTTGCTCGTGAAATTTGTGCCAAAAAGTTTTCACAAATTTCCAATTTAAATGAACATATGGGAATACACACTAGCGATAATTCTTTTACATATGAAAGCTTTAAGAGTTTTTTACAAAGATCCAATTTATCAAAAGATATGGGAATACATACTGGTGATAAACCTTTTGCATGTGAAATTTGCTCCAAAACGTTTTCATTAAAATCCAGTTTAAAAGCGCATGTAAGAATACACACTGGTGATAAACCTTTTGCATGTGAAACTTGTTCCAAATGTTTTTCACAAAGATCCAGTTTAACAGACCATATACGAGTACACACTGGGGATAAACCTTTTGTATGTGAAATTTGTGTCAAAAAGTTTTCACAAAGATCTACGTTAGCAGAACATATTAGAGTACATACTAGGGATAAACcttttgaatgtgaaatttgctccAAGAGATTTTCAAATAGATCCGGGTTATCAGAACATATGAGAGTACATACTGGCGATAAACCTTTTGCATATGGCATTTGCTCCAAGAGGTTTTCACAAAGATCCACTTTAAAAGGCCATATGAGAGTACATACTGGGGATAAACCTTTTCCATGTGAAATTTGCTCCAAAACCTTTTCACTAACATCCAATTTAAAAAAGCATATGAAAATACACACGGGTGATAAACcttttgaatgtgaaatttgctccAAGAGTTTTTCAAATAGATTCGGGTTATCAGAACATATGAGAGTACATACTGGGGATAAACCTTTTCCATGTGAGATTTGCTCCAAAACGTTTTCATTAAAATCCAGTTTAAAAGCGCATATGAGAATACACACTGGTGATAAACcttttgaatgtgaaatttgctccAAGAGTTTTTCAAATAGATTCGGGTTATCAGAACATATGAGAGTACATACTGGGGATAAACCTTTTCCATGTGAGATTTGCTCCAAAACGTTTTCATTAAAATCCAGTTTAAAAGCGCATATGAGAATACACACTGGTGATAAACcttttgaatgtgaaatttgctccAAGAGTTTTTCAAATAGATTCGGGTTATCAGAACATATGAGAGTACATACTGGGGATAAACCTTTTCCATGTGAGATTTGCTCCAAAACGTTTTCATTAAAATCCAGTTTAAAAGCGCATATGAGAATACACACTGGTGATAAACCTTTTGAATGTGAAATTGGTTCCAAATGTTTTTCACAAAGATCCAGTTTAAAAGACCATATGCGATTACACACTGGGGATAAACCTTTTGTATGTGAAATTTGCTCCAAGAGTTTTTCAAATAGATCCGGTTTATTAGAACATATGAGAATACACACTGGTGGTGATAAACCATTTGTATGTGAAATTTGCTCCAAGAGTTTTTCAAATAGATCCGGTTTATTAGAACATATGAGAATACACACTGGTGGTGATAAACCATTTGTATGTGAAATTTGCTCCAAGAGTTTTTCAAATAGATCCGGTTTATTAGAACATATGAGAATACACACTGGTGGTGATAAACCATTTGTATGTGAAATTTGCTCCAAGAGTTTTTCACAAAGATGCACGTTAGAAGAACATGTGAGAGTACATACTGACGATAAACTTTTTGCATGTGAAATTTGCTTCAAAAGATTTTCACAAAGATGCACGTTAGAAGAACATGTGAGAGTACATACTGACGATAAACTTTTTGCATGTGAAATTTGCTTCAAAAGATTTTCACAAAGATGCACGTTAGAAGAACATGTGAGAGTACATACTGACGATAAACTTTTTGCATGTGAAATTTGCTTCAAAAGATTTTCACAAAGATGCGGGTTAGCAAAACATATGAGAGTACATACGGGGTCCTGA
- Protein Sequence
- MGEPEILERWKEYFDELLNGPEQTDDNNEETMDLVNEIQNQQSEEQAPTISEIQNIIDKLKMNKSPGSDCITAEMIKFGGNQLVDKIPKLINDIWEQEILPEEWTEAILCPIHKKGNMADCQNYRGFPHGFPCEICSELFSQRSMLKQHMGLHTEDKPFAGEIRAKNFSQNSHLNGHIMAIHTGDKPFACIICSKSFSQRSRKKYSTTKALLEVIEHIVHGLDAGEPTNGLMCDLTKAFDCVDIQTLLIKLEYYGIRGTIHELLKSYLTGRTQIVAFNNQESNPLPVSTGVPQGSVLGPLLFLIYINDLPSALDNTNCVLFADDTTLLCRGFPHGFSCEISSELLSQSSIFKEHMELDTEDKPFAREICAKKFSQISNLNEHMGIHTSDNSFTYESFKSFLQRSNLSKDMGIHTGDKPFACEICSKTFSLKSSLKAHVRIHTGDKPFACETCSKCFSQRSSLTDHIRVHTGDKPFVCEICVKKFSQRSTLAEHIRVHTRDKPFECEICSKRFSNRSGLSEHMRVHTGDKPFAYGICSKRFSQRSTLKGHMRVHTGDKPFPCEICSKTFSLTSNLKKHMKIHTGDKPFECEICSKSFSNRFGLSEHMRVHTGDKPFPCEICSKTFSLKSSLKAHMRIHTGDKPFECEICSKSFSNRFGLSEHMRVHTGDKPFPCEICSKTFSLKSSLKAHMRIHTGDKPFECEICSKSFSNRFGLSEHMRVHTGDKPFPCEICSKTFSLKSSLKAHMRIHTGDKPFECEIGSKCFSQRSSLKDHMRLHTGDKPFVCEICSKSFSNRSGLLEHMRIHTGGDKPFVCEICSKSFSNRSGLLEHMRIHTGGDKPFVCEICSKSFSNRSGLLEHMRIHTGGDKPFVCEICSKSFSQRCTLEEHVRVHTDDKLFACEICFKRFSQRCTLEEHVRVHTDDKLFACEICFKRFSQRCTLEEHVRVHTDDKLFACEICFKRFSQRCGLAKHMRVHTGS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -