g91173.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML019628.1:78862-100949[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 9.4e-06 0.0024 20.9 0.4 1 23 10 32 10 32 0.98 2 32 2.6e-05 0.0068 19.5 4.6 1 23 38 60 38 60 0.99 3 32 0.00052 0.14 15.4 0.3 1 23 66 88 66 88 0.98 4 32 4.9e-07 0.00013 24.9 0.9 1 23 94 116 94 116 0.98 5 32 1.2e-05 0.0032 20.5 1.2 1 23 121 143 121 143 0.98 6 32 6e-06 0.0016 21.5 0.1 1 23 149 171 149 171 0.98 7 32 0.00015 0.039 17.1 0.9 1 23 177 199 177 199 0.98 8 32 0.00074 0.19 14.9 2.7 1 23 205 228 205 228 0.97 9 32 3.6e-05 0.0094 19.0 0.7 3 23 235 255 234 255 0.97 10 32 0.0069 1.8 11.8 1.7 1 23 295 317 295 317 0.98 11 32 4.6e-06 0.0012 21.8 1.1 2 23 328 349 327 349 0.97 12 32 1.3e-05 0.0034 20.4 1.8 1 23 354 376 354 376 0.99 13 32 0.0069 1.8 11.8 1.7 1 23 415 437 415 437 0.98 14 32 4.6e-06 0.0012 21.8 1.1 2 23 448 469 447 469 0.97 15 32 2.5e-05 0.0066 19.5 1.5 1 23 474 496 474 496 0.98 16 32 0.0095 2.5 11.4 1.1 1 23 535 557 535 557 0.97 17 32 1.5e-05 0.0039 20.2 1.0 1 23 571 593 571 593 0.99 18 32 1.7e-05 0.0044 20.1 1.9 1 23 598 620 598 620 0.98 19 32 1e-05 0.0026 20.8 2.8 1 23 625 647 625 647 0.98 20 32 0.00072 0.19 14.9 1.5 1 23 656 678 656 678 0.98 21 32 0.00028 0.072 16.2 3.3 1 23 683 705 683 705 0.98 22 32 7.2e-06 0.0019 21.2 4.6 1 23 711 733 711 733 0.99 23 32 1.2e-05 0.003 20.6 2.4 1 23 739 761 739 761 0.98 24 32 1e-05 0.0027 20.7 0.3 1 23 767 789 767 789 0.98 25 32 0.00085 0.22 14.7 2.0 1 23 795 820 795 820 0.98 26 32 1.1e-06 0.00028 23.8 0.9 1 23 826 848 826 848 0.98 27 32 6.4e-07 0.00017 24.5 1.5 1 23 854 876 854 876 0.98 28 32 0.00059 0.15 15.2 1.3 1 23 881 903 881 903 0.98 29 32 6.8e-06 0.0018 21.3 0.3 1 23 909 931 909 931 0.98 30 32 1.8e-05 0.0047 20.0 0.9 1 23 937 960 937 960 0.97 31 32 3.1e-07 8.2e-05 25.5 1.0 1 23 966 988 966 988 0.99 32 32 0.0017 0.44 13.8 4.9 1 23 994 1016 994 1016 0.97
Sequence Information
- Coding Sequence
- atgaGACAGCACACTAAAGAAGCGCCttatgaatgtgaaatttgcccCAAGAAGTATCCAACAAGTAGTAGATTAAAAAGTCATATGACCGTGCATATGGAAAACCGTCCTTTTAAGTGTGATATTTGTCAGAAACAGTATAAAACAAATAAACATCTTCAATTGCATATCAAATCGCACACTGGAGGAGAAAATTTTTCGTGCGAAGTTTGTTCAGAACTTCTTCCTACATATTCTTCGTTGAGGGTTCATATGAGAACACATACTGAAGGAAGACCCTTCACATGCGAAGTTTGCTCCAAAGGATTTTTTAGCAGTTCTAACTTAAAAGTACATATGAGGGTTCACACGAATGAAATTTTCCCGTGTAAAGTGTGCcctaaacaatttttaacaaattaCAACTTAAAGATACATATGAGAAGGCATACAGATGACAGGCCTTTCCCCTGTGAAGTTTGTCCCAAACGGTTTGCAGTGCAAAATGAGTTAACTTCACACATGAGATGGCACACTAGAGACGTTCTTTTCACATGTGAAATTTGCAGTAAACAGTTTGTTACCAAGACAATATTAACTAATCATATGATAACTCATAAGGGGGAGAAACCATTCTCCTGCGAAATTTGCTGCAAACAGTTCGTTACCAAACAATCGTTAACTAGACATATTATGAGAGCTCATACGGGGAAAAAACCATTCTGTGAAATTTGCAAAAAACAGTTTGTTACCAAAAGATCATTAGCTATTCATATGAGGGCTCATACGAGGGAGAAACCATTCTCCTGTTCCTCCTCTGAAGAAATACACAATGATGCTAACAATGATTTGAACTTGGATAAACGCTTCGTAGGAGAGGACACTAAAACTGTTGATAATCCATTCACTTGTGAAGTTTGCTCCAAACAATATTTATTAGAACGTAATTTAAAAAGACATATGAAGTCGCATGATGGTACAGAAGAACATGAAAAACCTTTGGAATGCGAAATTTGTTTGAAAAGGTTTCGAAGAAATTCTGAAGTAAAATCGCATATGAGAACTCATACAGGAGAAACATTTAAGTGTGCTCTTTGCCCCAAAGAGTATTCctcaaattttactttaaaatcacATATGAGACGGCACACAGGAGAAACATTTTCATGTTCCTCCTCTGAAGAAATACACAATGATGCTAACAATGATTTGAACTTGGATAAACGCTTCATAGGAGAGGACACTAAAACTGTTGATAATCCATTCACTTGTGAAGTTTGCTCCAAACAATATTTATTAGAACGTAATTTAAAAAGACATATGAAGTCGCATGATGGTACAGAAGAACATGAAAAACCTTTGGAATGCGAAATTTGTTTGAAAAGGTTTCGAAGAAATTCTGAAGTAAAATCGCACATGAGAACTCATACAGGAGAAACATTTAAGTGTGACCTTTGCCCCAAAGAGTATTTTTCCAATTCTACTTTAAAAACACATATGAAATGGCATAGCGGAGAAACATTTTCATGTTCCGCCTCTGAAGAAATACACAATGATGCTAACAGTGATTTGAACTCGGACAAGCGCTTCCTAGGAGAGGACATACAAACTGTTGATACTTCATTCTCTTGTGAAATTTGCTCTAAACAGTATTTATTAGAACGTAATTTAAGAAGACATATGAAGTGGCATGATGGTGAAAACAAACCGCATGATGATAAAGAAAAACCTTTTGAATGTGAAGTTTGTTTGAAACGGTTTAAAACTAATGTTGAAGTAAAATCGCATATGAGAACTCATACTGGAGAAACATTTAAGTGTGAACTTTGCCCCAAAAAGTATTATTCAAATTCTTATTTAAAGTTACATATGAAGTGGCATAACGGAGAAACTTTTTCTTGTAAAATATGCTCCAAACAATTTGTAAGAAATTCTAAATTCAAAGCGCATATGTTAAAACACAGTGGAGGGAGCAAAGAAAGACGTTTCACATGTGCGATCTGCTCCCAAACATTTTTACACAAAGATAATTTAGCACGACATTTAAAATGGCACACTGGAGAAACTTACACGTGCGAGATTTGCTTCAAACAGTTCGTTGACCGCCATTATTTTAACGTCCATCTGAGATTGCATACGGGCGCAAAACCTTttcaatgtgaaatttgttcaaaacatttttcacACAAATCAGCAGTAAAAGTACACATGAGatcacacactggagaaaaacccttCAGCTGTGAAGTTTGCTCCAAACAGTGTGCAACCAGTTCGGATTTAAAGGTTCATATGAGAAAGCACACTAAAGAAGCGCCTTACGAATGCGAAATTTGCCCCAAGAAGTATGCAACAAGTAGTAGATTAAACAGTCATATGACCGTGCATATGGAAAACCGTCCGTTTAAGTGTGATATTTGTCAAAGGCAGTATAAAACatataaaacaaataaagatcttCAAGTGCATATCAAATCGCACACTAGAGAAAAAACTTTTTCGTGCGAAGTTTGTGCAAAACCATTTACTACAAATTATTCGTTGAGATTACATATGAGAACACATACTGGAAGAATAACCTTCACATGCGAAGTTTGCTCCAAAGGATTTTGCAGCAGTGCTAATTTAAAAGTACATATGAGGGTGCATACCAATGAATTTTTTCCGTGTCAAGTGTGCcctaaacaatttttaacaaaatacaaattaaagaTACATATGAGTAGGCATACAGATGACAGGCCTTTCCCCTGTGAAATTTGCTCCAAACGGTTTGCAGTGAAAAATGAGTTAACTTCACACATGAGATGGCACACTAGAGACGTTCTTTTTACATGCGAAGTTTGCAACAAACAGTTTGTTACCAAGACGGTATTAACTAGACATATTATGAGACTTCATACGGCGGAAAAACCAttcaaatgtgaaatttgcagtAAACAATTTGTTAGCAAGTCAGAATTAACTAATCATATGATAACTCATACGGGTGAAAAACCATTCTTCTGCGAAATTTGCTGCAAACAGTTCGGTACCAAAAGATCATTAACTAATCATATGAGAACTCATATGGATGAAAACCCAATTCAAATGTGA
- Protein Sequence
- MRQHTKEAPYECEICPKKYPTSSRLKSHMTVHMENRPFKCDICQKQYKTNKHLQLHIKSHTGGENFSCEVCSELLPTYSSLRVHMRTHTEGRPFTCEVCSKGFFSSSNLKVHMRVHTNEIFPCKVCPKQFLTNYNLKIHMRRHTDDRPFPCEVCPKRFAVQNELTSHMRWHTRDVLFTCEICSKQFVTKTILTNHMITHKGEKPFSCEICCKQFVTKQSLTRHIMRAHTGKKPFCEICKKQFVTKRSLAIHMRAHTREKPFSCSSSEEIHNDANNDLNLDKRFVGEDTKTVDNPFTCEVCSKQYLLERNLKRHMKSHDGTEEHEKPLECEICLKRFRRNSEVKSHMRTHTGETFKCALCPKEYSSNFTLKSHMRRHTGETFSCSSSEEIHNDANNDLNLDKRFIGEDTKTVDNPFTCEVCSKQYLLERNLKRHMKSHDGTEEHEKPLECEICLKRFRRNSEVKSHMRTHTGETFKCDLCPKEYFSNSTLKTHMKWHSGETFSCSASEEIHNDANSDLNSDKRFLGEDIQTVDTSFSCEICSKQYLLERNLRRHMKWHDGENKPHDDKEKPFECEVCLKRFKTNVEVKSHMRTHTGETFKCELCPKKYYSNSYLKLHMKWHNGETFSCKICSKQFVRNSKFKAHMLKHSGGSKERRFTCAICSQTFLHKDNLARHLKWHTGETYTCEICFKQFVDRHYFNVHLRLHTGAKPFQCEICSKHFSHKSAVKVHMRSHTGEKPFSCEVCSKQCATSSDLKVHMRKHTKEAPYECEICPKKYATSSRLNSHMTVHMENRPFKCDICQRQYKTYKTNKDLQVHIKSHTREKTFSCEVCAKPFTTNYSLRLHMRTHTGRITFTCEVCSKGFCSSANLKVHMRVHTNEFFPCQVCPKQFLTKYKLKIHMSRHTDDRPFPCEICSKRFAVKNELTSHMRWHTRDVLFTCEVCNKQFVTKTVLTRHIMRLHTAEKPFKCEICSKQFVSKSELTNHMITHTGEKPFFCEICCKQFGTKRSLTNHMRTHMDENPIQM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -