g64689.t1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Diabrotica virgifera
Gene Symbol
-
Assembly
GCA_003013835.2
Location
ML016704.1:311949-335311[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 0.11 29 8.0 1.1 1 23 22 44 22 44 0.97
2 40 1.9e-05 0.0048 19.9 0.5 2 23 123 144 122 144 0.96
3 40 5.2e-05 0.014 18.5 1.4 1 23 150 172 150 172 0.93
4 40 0.00022 0.057 16.6 1.4 1 23 178 200 178 200 0.97
5 40 1.2e-05 0.0032 20.5 0.7 2 23 207 228 206 228 0.98
6 40 0.00048 0.12 15.5 4.9 1 23 232 254 232 254 0.97
7 40 0.0012 0.31 14.3 0.9 2 23 263 285 262 285 0.92
8 40 0.00096 0.25 14.5 0.0 1 23 290 312 290 312 0.96
9 40 0.0022 0.57 13.4 5.0 1 23 318 340 318 340 0.98
10 40 3.3e-05 0.0086 19.1 3.1 1 23 346 368 346 368 0.98
11 40 1e-05 0.0026 20.8 0.9 2 23 374 396 373 396 0.96
12 40 8.2e-07 0.00021 24.2 1.0 1 23 402 424 402 424 0.99
13 40 0.022 5.6 10.3 1.3 1 23 458 480 458 480 0.97
14 40 2.4e-05 0.0062 19.6 0.3 2 23 559 580 558 580 0.96
15 40 0.00036 0.094 15.9 3.2 1 23 586 608 586 608 0.93
16 40 0.002 0.52 13.5 0.8 1 23 614 636 614 636 0.97
17 40 4.6e-05 0.012 18.7 0.5 2 23 643 664 642 664 0.98
18 40 0.00031 0.081 16.1 3.1 1 23 668 690 668 690 0.97
19 40 0.0012 0.31 14.3 0.9 2 23 699 721 698 721 0.92
20 40 0.0015 0.38 14.0 0.1 1 23 726 748 726 748 0.95
21 40 0.03 7.7 9.9 3.2 1 23 754 776 754 776 0.98
22 40 0.00055 0.14 15.3 0.7 1 23 782 804 782 804 0.98
23 40 3e-05 0.0078 19.3 2.2 2 23 810 832 809 832 0.96
24 40 2.4e-06 0.00063 22.7 1.0 1 23 838 860 838 860 0.99
25 40 0.064 17 8.8 1.5 1 23 894 916 894 916 0.97
26 40 3.4e-05 0.0088 19.1 0.4 2 23 995 1016 994 1016 0.96
27 40 4.4e-06 0.0011 21.9 1.5 1 23 1022 1044 1022 1044 0.93
28 40 0.00021 0.055 16.6 1.2 1 23 1050 1072 1050 1072 0.97
29 40 2.6e-05 0.0067 19.5 0.8 2 23 1079 1100 1078 1100 0.98
30 40 0.00017 0.044 16.9 2.5 1 23 1104 1126 1104 1126 0.97
31 40 0.0012 0.31 14.3 0.9 2 23 1135 1157 1134 1157 0.92
32 40 0.00096 0.25 14.5 0.0 1 23 1162 1184 1162 1184 0.96
33 40 0.11 29 8.0 5.7 1 23 1190 1212 1190 1212 0.98
34 40 0.00012 0.032 17.4 1.1 1 23 1218 1240 1218 1240 0.99
35 40 1.6e-05 0.0041 20.2 0.7 2 23 1246 1268 1245 1268 0.95
36 40 0.00037 0.096 15.9 2.6 1 23 1274 1296 1274 1296 0.99
37 40 0.012 3.1 11.1 0.3 1 23 1302 1325 1302 1325 0.95
38 40 0.00068 0.18 15.0 2.8 1 23 1330 1352 1330 1352 0.96
39 40 2.9e-05 0.0076 19.3 2.8 1 23 1358 1380 1358 1380 0.98
40 40 6.7e-07 0.00017 24.5 2.7 1 23 1386 1408 1386 1408 0.99

Sequence Information

Coding Sequence
NGATTGAAAAACATTCCTGAAAGAAGAAAATCTCTCAAAAACTTTGAGGGCAAAGGAAAATTACACAGTTGTAATTTTTGTGGAGCGTCCTTCCTCCAAGGAGATGAATGGAGTAAACACTTGAAAACACACCAAACGACAGTTTTAACCAAATTATTTCTCTCTACTAAATTAAAGAATCTTGTTGATCGCAGACTATTAGAGAAAGATGAGAACTGCGATTCTTTTCGTAAACTGCTGTACGTAAATTTATCTGACGCCGTTTTTACAACTAAATCTTTTGCAACAGTAAAGGCTTATGCCAAGAAAACTAAAAACGGTAAAAGTATGAATGATGTTAAAGCTCATGTCAATTCAAAAAGGGTTAGTTGTAAAATATGTAAGAAGACGTACTCTTCACGTAAGGGTCTGAATGCACACATGGAAGTACATGCCAAAGAAAAGAAATTTAAATGTGACCTGTGCGATCGAACTTTTACGTATGAAAGTTATCTTAAAAAACACGCAGTTCTTCATTCTAAGGAGAAAAAGTTCGAATGTAATATATGCTTTAAACGATTTAGTTTAAAGGAATATTTACGCACTCATCTAATTCTACATACAGGCGAAAAGAAAGTTAAATGTCCCGTCTGTAGTAAAGCATTTGCttataaaaataatgtgaaaAGGCATTTGAAAACCCACGAGAAGAATTTTACCTGTCACTTGTGCTCTAAACGTTTTAGTGAAAAAAGACATCTGGTTCGGCATCTGGTTGTGCATAGTGTTTCTCGCCCTGATAATACTAAGTGTATGATATGCTCCAAGGAGTTCTCGAATAACGAACAATTAAAAGAGCACTTTGACAGTTTACACGGAGCAAAACAATTTAAATGTGACATTTGTCCTGCTGCATTTGCAACAAAGACAAACTTGGGTTATCATTTAGCGTGGCATAAGGGAGAAAAAACACATCAATGTAATATCTGCAAGAAAGCCTTTCAATTTAGACACATGTTGAAATCACATTTATTAATACATAAAGGCCAAGAACCTTTTAAATGTTCATATTGTTCAAAAGCCTTTACTCATTCTGGAAGTTTAAAACTGCATGAAAAAATTCACACGGGCGAGAAAGTCTATTGTAAAGTTTGTAACAAAGGCTTCACACAACCTTCCAACTTATACGAGCACCACAGAATAGTTCACGAGAAGAGAAAAGATTATCAATGTACGATTTGTTCAAAAGCCTTTCCTCAGAAAAAGAATCTTCAATACCATATATTAACGCATACTGGGGAGAGACCCCACAAATGTGACATATGTTCACGATTGAAAAACATACCTGAAAGAAGAAAATATCACAAAAACTTTCATGGCCAAGGAAAATTACACAGTTGTAATTTTTGTGGAGCGTCCTTCCTCCAAGAAGATGAATGGAGTAAACACTTAAAAACACACCAAACGACAGTTTTAACTAAATTATCTCTCTCTACTAAATTAAAGAATCTTGTTGATCACGGACTATTAGAGAAACACGGTAACTGCGAGTCTTTTCGTAAACTGTTGTACGTAAATTTATCTGACGCCATTTTTACAACTAAATCTTTTGCAACAGTAAAGGCTTATACCAAGAAAACTAAACGTGGTAAAAGTGTGAATTATCTTAAAGCTCATGTCAATTCAAAAAGAGTTAGTTGTAAAATATGTAAGAAGATGTACTCTTCACCCAAAGCTCTGAATACACACATGGAAGTACATGCTAAAGAAAAGAAATTTAAATGTGACTTGTGCGATCGAACTTTTacatataaatgtaatcttaaCAGCCACGCAGTTCTTCATTCCAAGGAGAAAAATTTTGAATGTAATATATGCCTTAAACGATTTAGTTTAAAGCGATATTTAAGCATCCATCTAATTCTACATACAGGCGAAAAGAAAGTTAAATGCCCCGTCTGTAGTAAAGCATTTGCttataaaattaatatgaaaAGTCATTTGAAAACCCACGAGAAGAATTTTACTTGCCACTTGTGCTCTAAACGTTTTAGTGTTAAAAAATATCTGGTTCGGCATTTGGTTGTGCATAGTGTTTCTCGTCCTGATAATACTAAGTGTATGATATGCTCCAAGGAATTCTCGAATAACGAACAATTAAAAGAGCACTTTGACAGTTTACACGGAGCAAAACAATTTAAATGTGACATTTGTCCTGCTGCATTTGCAACAAAGACAAACTTGGGTTATCATTTAGCGTTTCATAAGGGAGAAAAAACACATAAATGTAATATCTGCATGAAAGCCTTTCAATTTAGACGCATGTTGAAATCACATTTAGCAACACACACAGGCCAAGAACCTTTTAAATGTTCATATTGTTCAAAAGGCTTTATTCTTGCTCAAAGTTTAAAAATGCATGAGAGAATTCACACGGGTGAGAAGGTCTACTGTAAAGTTTGTAACAAAGGCTTCACACAACCTTCCCACTTATATGACCACCACAGAGTAGTTCACGAGAAGAGAAAAGATTATCAATGTACGATTTGCTCAAAAGCCTTTCCTCAGAAAAAGAGTCTTCAATACCATATATTAACGCATACTGGGGAGAGACCCCACAAATGTGACATATGTTCACGATTGAAAAACATACCTGAAAGaagaaaatatctcaaaaactttGAGGGCAAAGGAAAATTACACAGTTGTAATTTTTGTGGAGCGTCCTTCCTCAAAGAAGATGAATGGAGTAAACACTTGAAAACACACCAAACGAAAGTTTCAACTCAATTATCTCTCTCTACTAAGTTAAAGAATCTTGTTGATCACAGACTGTTAGAGAAACATAGCAACTGCGATTATTTTCGTAAACTGTTGTATGTAAATTTATCTGACGCCATTTTTACACCGAAATCATTTGCAACAGTAAAGGCTTATGCCAAGAAAACTAAAAATGGTAAAAGTGTGAATTATCTTAAAGCTCATGTCAATTCAAAAAGGGTTAGTTGTAAAATATGTAAAAAGAAGTACTCTTCACCTAAGGGTCTGAAGGTACACATGGAAGTACATGCTAAAGAAAAGAAATTTAAATGTGACTTGTGCGATCGAACTTTTACATATAAAAGTAATCTTACAAAACACGCAGTTcttcattccaaagagaaaaatTTCGAATGCAACATATGCTTTAAACGATTTAGTTTAAAGGGATATTTACGCACTCATCTAATTCTACATACAGGTGAAAAGAAAGTTAAATGTCCTGTCTGTAGTAAAgcatttgtttataaaaataatatgaaaagTCATTTGAAAACCCACGAGAAGAATTTTACCTGTCAAGTGTGCTCTAAACGTTTTAGTGAAAAAAGACATCTGGTTCGGCATCTGGTTGTGCATAGTGTTTCTCGCCCTGATAATACTAAGTGTATGATATGCTCCAAGGAGTTCTCGAATAACGAACAATTAAAAGAGCACTTTGACAGTTTACACGGAGCAAAACAATTTAAATGTGACATTTGTCCTGCTGCATTTGCAACAAAGACAAACTTGGGTTATCATTTAGCGTGGCATAAGGGAGAAAAAACACATCAATGTAATATCTGCATGAAAGCCTTTCAATTTAGACACATGTTGAAATCACATTTGACAACACACACAGGCCAAGAACCTTTTAAGTGTTCATATTGTTCGAAAGGCTTTATTTTTGCTCAAAGTTTAAAAATGCATGTGAGAATTCACACGGGTGAAAAAGTCTACTGTAAAGTTTGTAACAAAGGCTTCACACAGATTTCCCAATTAAACAGGCACCGCAGAGAAGTTCACGAGAAGAGAAAAGATTATCAATGTTCGATTTGCTCAAAAGCCTTTCCTCAGAAAAAGACTCTTCAATGCCATATATTAACGCATACTGGGGAGAGACCCCACAAATGTGACATATGTTTAAGTACGTTTGTGACCAAAAGTGCTTTGGTAGGGCATATTTCTAATATACATGAGAAAAAGAAACATAAATGTGACAAATGTTCAAAAGAGCTAAGTTCTCGTTCGAATCTAGTTCAGCATATGTTCTTGCATTCTGAGAATAGACCTCACAAGTGCAGTTCGTGTCCAAAATCTTTTACTACGAAACAATCACTGGCCTACCATATGGCAACGCATACAGGAGAAAAAAACTTCAAATGTTCTACTTGTTCTAAATCATTTATCGACTGGTCTAATTTCAGAAGACATTTGAAAATGCATAcgaaagaaaaatacaaaaaatag
Protein Sequence
XLKNIPERRKSLKNFEGKGKLHSCNFCGASFLQGDEWSKHLKTHQTTVLTKLFLSTKLKNLVDRRLLEKDENCDSFRKLLYVNLSDAVFTTKSFATVKAYAKKTKNGKSMNDVKAHVNSKRVSCKICKKTYSSRKGLNAHMEVHAKEKKFKCDLCDRTFTYESYLKKHAVLHSKEKKFECNICFKRFSLKEYLRTHLILHTGEKKVKCPVCSKAFAYKNNVKRHLKTHEKNFTCHLCSKRFSEKRHLVRHLVVHSVSRPDNTKCMICSKEFSNNEQLKEHFDSLHGAKQFKCDICPAAFATKTNLGYHLAWHKGEKTHQCNICKKAFQFRHMLKSHLLIHKGQEPFKCSYCSKAFTHSGSLKLHEKIHTGEKVYCKVCNKGFTQPSNLYEHHRIVHEKRKDYQCTICSKAFPQKKNLQYHILTHTGERPHKCDICSRLKNIPERRKYHKNFHGQGKLHSCNFCGASFLQEDEWSKHLKTHQTTVLTKLSLSTKLKNLVDHGLLEKHGNCESFRKLLYVNLSDAIFTTKSFATVKAYTKKTKRGKSVNYLKAHVNSKRVSCKICKKMYSSPKALNTHMEVHAKEKKFKCDLCDRTFTYKCNLNSHAVLHSKEKNFECNICLKRFSLKRYLSIHLILHTGEKKVKCPVCSKAFAYKINMKSHLKTHEKNFTCHLCSKRFSVKKYLVRHLVVHSVSRPDNTKCMICSKEFSNNEQLKEHFDSLHGAKQFKCDICPAAFATKTNLGYHLAFHKGEKTHKCNICMKAFQFRRMLKSHLATHTGQEPFKCSYCSKGFILAQSLKMHERIHTGEKVYCKVCNKGFTQPSHLYDHHRVVHEKRKDYQCTICSKAFPQKKSLQYHILTHTGERPHKCDICSRLKNIPERRKYLKNFEGKGKLHSCNFCGASFLKEDEWSKHLKTHQTKVSTQLSLSTKLKNLVDHRLLEKHSNCDYFRKLLYVNLSDAIFTPKSFATVKAYAKKTKNGKSVNYLKAHVNSKRVSCKICKKKYSSPKGLKVHMEVHAKEKKFKCDLCDRTFTYKSNLTKHAVLHSKEKNFECNICFKRFSLKGYLRTHLILHTGEKKVKCPVCSKAFVYKNNMKSHLKTHEKNFTCQVCSKRFSEKRHLVRHLVVHSVSRPDNTKCMICSKEFSNNEQLKEHFDSLHGAKQFKCDICPAAFATKTNLGYHLAWHKGEKTHQCNICMKAFQFRHMLKSHLTTHTGQEPFKCSYCSKGFIFAQSLKMHVRIHTGEKVYCKVCNKGFTQISQLNRHRREVHEKRKDYQCSICSKAFPQKKTLQCHILTHTGERPHKCDICLSTFVTKSALVGHISNIHEKKKHKCDKCSKELSSRSNLVQHMFLHSENRPHKCSSCPKSFTTKQSLAYHMATHTGEKNFKCSTCSKSFIDWSNFRRHLKMHTKEKYKK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-