g86777.t2


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Diabrotica virgifera
Gene Symbol
-
Assembly
GCA_003013835.2
Location
ML018866.1:35065-107979[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 48 0.00016 0.041 17.0 1.2 1 23 108 131 108 131 0.98
2 48 7.4e-06 0.0019 21.2 1.3 1 23 137 159 137 159 0.98
3 48 1.8e-06 0.00047 23.1 1.3 1 23 165 187 165 187 0.98
4 48 0.00014 0.038 17.1 1.5 2 23 194 215 193 215 0.97
5 48 0.00074 0.19 14.9 1.0 1 23 221 243 221 243 0.98
6 48 0.0046 1.2 12.4 0.3 1 23 249 271 249 271 0.95
7 48 6.1e-05 0.016 18.3 2.3 1 23 277 299 277 299 0.98
8 48 8.9e-06 0.0023 20.9 0.5 2 23 306 327 305 327 0.97
9 48 0.0001 0.027 17.6 2.5 1 23 333 355 333 355 0.97
10 48 3.7e-05 0.0095 19.0 3.4 1 23 361 383 361 383 0.98
11 48 1.9e-05 0.005 19.9 0.6 2 23 391 412 390 412 0.97
12 48 0.00069 0.18 15.0 1.6 2 23 419 440 418 440 0.97
13 48 0.0015 0.39 13.9 3.0 1 23 446 468 446 468 0.98
14 48 0.0052 1.4 12.2 1.8 1 23 495 517 495 517 0.98
15 48 1.1 2.8e+02 5.0 0.6 1 23 523 546 523 546 0.83
16 48 2.5e-06 0.00065 22.7 3.6 1 23 552 574 552 574 0.99
17 48 0.059 15 8.9 3.2 1 23 584 606 584 606 0.96
18 48 0.0056 1.5 12.1 0.2 2 23 619 640 618 640 0.95
19 48 7.1e-05 0.019 18.1 0.3 1 23 673 695 673 695 0.96
20 48 0.0007 0.18 15.0 6.0 1 23 828 851 828 851 0.97
21 48 0.0003 0.077 16.1 5.5 1 23 857 879 857 879 0.97
22 48 1.8e-07 4.6e-05 26.3 1.3 1 23 885 907 885 907 0.98
23 48 0.0003 0.078 16.1 1.5 2 23 914 935 913 935 0.97
24 48 0.0001 0.027 17.6 2.5 1 23 941 963 941 963 0.97
25 48 3.7e-05 0.0095 19.0 3.4 1 23 969 991 969 991 0.98
26 48 0.00011 0.027 17.6 1.4 2 23 999 1020 998 1020 0.96
27 48 0.00069 0.18 15.0 1.6 2 23 1027 1048 1026 1048 0.97
28 48 0.0015 0.39 13.9 3.0 1 23 1054 1076 1054 1076 0.98
29 48 0.0052 1.4 12.2 1.8 1 23 1103 1125 1103 1125 0.98
30 48 0.00045 0.12 15.6 0.9 1 23 1131 1153 1131 1153 0.98
31 48 6.5e-06 0.0017 21.4 2.6 1 23 1159 1181 1159 1181 0.99
32 48 0.017 4.5 10.6 2.9 1 23 1191 1213 1191 1213 0.97
33 48 1 2.6e+02 5.0 1.0 2 20 1240 1258 1239 1259 0.92
34 48 0.035 9.2 9.6 1.1 2 23 1295 1316 1294 1316 0.96
35 48 1.2e-05 0.0032 20.5 0.4 1 23 1349 1371 1349 1371 0.96
36 48 0.0017 0.44 13.8 5.2 1 23 1504 1527 1504 1527 0.97
37 48 3.3e-06 0.00086 22.3 0.8 1 23 1533 1555 1533 1555 0.97
38 48 2.6e-05 0.0068 19.5 2.3 1 23 1561 1583 1561 1583 0.98
39 48 0.00083 0.22 14.7 0.7 2 23 1590 1611 1589 1611 0.97
40 48 0.00021 0.056 16.6 1.3 1 23 1617 1639 1617 1639 0.97
41 48 5.2e-05 0.014 18.5 1.1 1 23 1645 1667 1645 1667 0.98
42 48 2.2e-06 0.00057 22.9 3.1 1 23 1673 1695 1673 1695 0.98
43 48 0.0025 0.66 13.2 4.4 2 23 1702 1723 1701 1723 0.97
44 48 1.3 3.3e+02 4.7 3.6 1 23 1736 1758 1736 1758 0.97
45 48 0.0038 1 12.6 0.7 1 23 1764 1786 1764 1786 0.98
46 48 0.0012 0.31 14.2 3.2 1 23 1807 1829 1807 1829 0.98
47 48 0.87 2.3e+02 5.2 0.1 5 19 1859 1873 1858 1875 0.94
48 48 0.0018 0.47 13.7 0.2 2 23 1911 1932 1910 1932 0.95

Sequence Information

Coding Sequence
ATGacagatttatttaaaaatgaacctgAAAATTTATCTTTTGAATTTACTGAGCTAGAAGACCAAATAAAACCTTATTACATAGATAAAGGGGTAAGGCCCAAGGAAATAAAGATAGAACAATGCAATAATGATCTGAAATTTGAGGTAAATGAAAATGACTTAAAATATCAGATTGTACATACTGAAGGAATGGAACTTGAGCCAAATGTAATGGATGATAACTCAAAAGATGCAGAGATAAATGAAAAAGGTGTTCATTCTCTAGTTGTAAAGGATAGTGTGGTTGGTGATATGTTGGAGGATGAAGGGGAGAAGCAGTTCCAATGCACAATTTGCTTTAAACAGCTCGCATCAAAAACCAATCTCAATCGCCATCTTTTAACGTTGCACAAAGGCATAAAAGCCTTCTATTGCAAAATCTGTGGGAAAAGGTTCACAGCAAAAACATCTCTCATTAATCATGTTCGATCTCATTATGGAGAGAGACCTTTTAAATGTAAAGATTGTCCACGGCGGTTCAATAACAGAAGTGCATTGAACGCACATACGAGGTTACACACTGGTCAAAACCTTCTAAAATGTGAATATTGTTCTAAACAGTTTACAGGAAAAACTCAATTCCAAATTCATTTACGTGTGCATGCTGAAGAAAAACCATTCAAATGCACAATTTGCTCTCTACAGGTCACAACACAGAACAGTCTTAATCGCCATTTACTTAGCCACAAAGGAATAAAACTCTTCCAATGCAGAATATGTGGGAAAAGATTAACAACAAAACCATCTCTTGATTATCATGTTCTAGCTCATTATGGAGAGAGACCTTTTCAATGTAACGTTTGTCTGCGGCAGTTTAGAAACAACAGTTTATTGAACAAACATACAAGGTTACACACAGGTGAAAACCTTCTAAGATGTGAATATTGCTCTAAAGAGTTTACAGTAAACTCTCAACTTCAAATTCATTTACGTGTACATGCCGAGGAAAAACCATTCAAATGCACCATTTGCTCTACACAGTTCACAACGAAAGCCAGTCTTAATCGCCATTTGTTCAACCACACAGGAATAAAACCCTTCGAATGTGGGATGTGTTCAAAAAGATACACATCAAAAACATCTCTCATTCATCATATGCGAAGTCATTCTGGAGAAACATCATCTATTCAATGTGATATTTGTTCACAACAGTTCAAAAACCAGAGTTTATTGACCGTTCATATGAAGTTACACACTGATGAAAAACTTCTAAAATGTGAATATTGTTCTAAACAGTTTACAGGAAACTATAAATTTCAAATTCATTTACTTACGCACAAAGGAGACAAGACATTTAAATGTGATATTTGCGATAAAAAGTTCAGTAATAATGATGAATGCATATTGCACAGAAGTACACATACAACAAATTCTCCAGAACAAGAACAAGGAGACAAGCTATTTGAATTGGAGACCATTGGAGACAAAGAAGACAAGCCATTTGAGTGCGATATTTGTTATAAAAAGTTTTGGGATAATGATCAATTCCTCACACATAAACGTACACATACCATTGAAAATTCTTTtgagtgtaaaatttgttttgaGGATTTTACGGAAAGTACCACCACCTTGGCTACACATATGAGGCTGCACACAGAAGAAAAGATTTTCAAGTGTGACAAATGCCCCAAAGAGTTCAGAAAAAAATACCTACTTCAGAGACACTTACGTAGGCATCTAAAAAAGCACGTTGGAAACAAACCTTTTGAATGTGATCTTTGCGATAAAAAATTCAGTTATAATAACGAATGCATACTACACAGAAGTACACATACAACAGATTCTGTAGAGAATCAGCTAGATAAGTTAAAATGTGGTATTTGTTCCCAAGTGTTTACAGAAAATGAACAATTGGCGCAACATAAATTTGTACACATTGAAGAACCTCAGCAATGTGTTGTTGAGTCTCTAAAATTTAAACAAATAGATAGTTCTATTGAAAATTTACAATGCCACATAAAAGAAACAATTTTCAAATGTAACATTTGCTCTGAAGAATTTTCAGAAAGTGATCAATTAACTCAACATATGGTGCTACATACAGAAGAAACAGTTTTGCAACAAATCGCATGTGATAATAGTTTCCGTATGTCTCCAAAAACTGGCCAAACAACAGATGAAAAACAACACCgagatttatttaaaaataaatctgAAAAGGTATCTTTTAAATCTACTGAGGGAAAAGACCAAATAAAACCTAAGTATCATTCGAACGAAATACAGACAGAAAAATGCAATAATGATCTGAAATTTGAGGTAAATGAAAGTGACTTAAAGTATCAGATTGTACATACTGAAGGCATGGAATTTGAGCAAAATGTAATTGATGATAACTTAAAAGATGCAGAAAGAAATGAAAAAGGTGTTCATTCTACAGTTGTTGTAAATGATAGTGTGGTTGGCGATATGTTGGAGAATCGAGAAGAGAAGCTGTTCCAATGCAAAATTTGTCGGAAACAATTCAACCAAAAGCAAAATCTTCACCGTCATTTTTCAACGTTGCACCAAGGCATAAAAGCTTTCTGTTGCAAAATCTGTGGGAAAAGATTCACAGCAAAAACTACTCTCATTCATCATACTCGAATTCATTCTGGAGAGACACCTTTTAAATGTACAATTTGTCCAAAACAGTTCAGAGACAAGAGTTCATTGAACATTCATATGAGGTTACATACTGGTGAAAAACTTCTAAAATGCGAATATTGTTCTAAACAGTTTACAGGAAATTATAAATTTCAAATTCATTTACGGGTGCATGCCGAGGAAAAACCATTCAAATGCACCATTTGCTCTACACAGTTCACAACAAAAGCCAGTCTTAATCGCCATTTGTTTAACCACACAGGAATAAAACCCTTCGAATGTGGGATGTGTTCCAAAAGATACACATCAAAAACATCTCTCATTCATCATATGCGAAGTCATTCTGGAGAAACATCATCTATTCATTGTGATATTTGTTCACAACAATTCAAAGACCAGAGTTTATTGACCGTTCATATGAAGTTACACACTGATGAAAAACTTCTAAAATGTGAATATTGTTCTAAACAGTTTACAGGAAACTATAAATTTCAAATTCATTTACTTACGCACAAAGGAGACAAGACATTTAAATGTGATATTTGCGATAAAAAGTTCAGTAATAATGACGAATGCATATTGCACAGAAGTACACATACAACAAATTCTCCAGAACAAGAACAAGGAGACAAGCTATTTCAATTGGAGACCATTGGAGACAAAGAAGACAAGCCATTTGAGTGCGATATTTGTTATAAAAAGTTTTGGGATAATGATCAATTCCTCACACATAAACGTACACATACCATTGAAAATTCTTTTAAGTGTCAAATTTGTTTTGAGGATTTTACGGAAAGTACCACCTTGGCTACACATATGAGGCTGCACACAGAAGAAAAGATTTTCAAGTGTGACAAATGCCCCGAAGAGTTCAGAAAAAAATACCTACTTCAGAGACACTTACGTAGGCATCTAAAAAAGCACGTTGGGAACAAACCTTTTGAATGTGATCTTTGCGATAAAAAATTCAGTAATAATAACGAATGCATACTGCACAGAAGTACACATACAACAGATTCTGTAGAGCAAGTTTTTATGGATCCACAAAAATTGAATCTTCAAATGAAAGTTCATCTAGACAagttaaaatgttatatttgtTCCCAAGTGTTTACAGAAGATAATCAGTTGGCGCAACATAAATGTTGCATACTACACAGAAGTGTAGTTCATTCATTAGGTTCTCTAGAACAGGTTTTTAAAGATCCACAAAAGTTGAATCTTCAAATGAAAGTTCATCTAGACAGGTTAAAATGTTATATATGTTCCCAAGTGTTTACAGAAGATGATCAGTTGGCGCAACATAAATGTATTCACATTGAAGAACCTCAGCAATGTATTGTTGATTctcaaaaaattaaacaaatagatAGTTCCATTCAACATTTACGATGCCACATAAAAGAAACATTTTTCAAATGTAACATTTGCTCTGAAGAATTTACAGACAGTGATCAATTAACTCAACATATGGTGCTACATACAGAAGAAACAGTTTTGCAACAAATCGCAGGTGATACTAGTTCCCGTATGTCTCCAGAAACTGGTCAAACAACAGATGAAAAACAACACCGagatttatttaaagataaacCTGAAAATGTATCTTTTCAATCTACCGAGGGAGAAGACCAAATAAAACCTAACTATCATTCGAATGAAATACACATAGCACAATGCAATAATGATCTGAAATTTGAGGTAAATGAAAGTGACTTAAAATATCAGATCCTACATACTGAAGGTATGGAATTTAAGCCAAATGTAATAAATGATAACTCAGAAGATGCAGAAAGAAATGAAACAGGTGTTCATTCTACAATTGTTGTAAATGATAGTGTGGTTGGTGATATGTTGGAGGATCGAGGAGAGAAGCTGTTCCAATGCAaaatttgtctgaaacaattcaatcaaaagcaaaatctTCACCGTCATTTTTCAACGTTGCACCAAGGCATAAAAGGGTTCTATTGCAAAATCTGTGGGAAAAGATTCACATCAAAAGCATCTCTGATTTATCATGTTCGAGCTCATTCTGGAGAGACACCTTTTAAATGTAAAGTTTGTCCGCGGCAGTTCAGAGACAACCGTTTATTGAACAAACATACAAGGTTACACACAGGTGAAAACCTTCTAAAATGTGAATATTGTTCTAAAGAGTTTACAGGAAACTATAAATTTCAAATTCATTTACTGGTGCATGCCGAGGAAAAACCATTCAAATGCACCATTTGCTCTGCACAGTTCACAACAAACGCCAGTCTTAATCGCCATTTATTTAACCACAAAGGAATAAAACCCTTCGAATGTGGGGTGTGTTTAAAGAGATTCACAACAAAAACATCTCTCATTTACCATATTCGAAGTCATTCTGGAGAGACACCTTTCAAATGTAAAATTTGTCCAAAACAGTTCAGAaacaagagtagattgaatagacATTTGAGGTTACATTCTAGTGAAAACCTTCTAAAATGTGAATATTGCTCTAAGCAGTTTACAGAAAACTGTGAATTTCAAAGACATTTAAGTACGCACAAACCATTTGAATTAAAGACCATTGGAGACCAGCCATTTGAATGTGATATTTGTTATAAAAAGTTTTGGGATAATGATCAATGCCTCACACATAAACGTACACATACCATTGAAAACTCTTTTAAGTGTCAAATTTGTTTTGAGGATTTTATGGAAAGTACCACCTTGGCTACACATATGAGGCTGCACACAGAAGAAAAAAGTGGCATGTTACGTACGTATCCACAGAAACCCGTTGAGGACAAACCTTTTGAATGTGATATTTGCGATAAAAAATTCAGTAATAATAACGAATGCATACGGCACAGAAGTACACATACAACAGATTCTCCAGGACAAGTTTTTATTGATCCACAAACATTGAATCTTCAAATAAAAGTTCATCTAGACGAGTTCAAATATGATATTTGTTCCCAAGTGTTTACAGAAAGTGATCAGTTGACGCATCATAATTTTGTACGCATTGAAGAACCTCAGCAACGTATTGTTGATTCTCTAAAATTTAAACAAATAGATAGTTCCATTGAAAATTTACAATGCGACATAAAAGAAACAATTTTGAAATGTAACATTTGCTTTGAAGAATTTACAGATGGTGATCAATTAACTCAACATATGGTGCTACATACAGAAGAAACAGTTTTGCAACAAATCGCATGTGATACTAGTTCCCGCGTGTCTCCAGAAGCTGATCAGACAATAGAAACATGGACCTtcacaaaggaaaatatggaaatgATGGCCAATACTCAAAGGGCAATGGAAAGGCAGATGCTGGGTATCAAGCTAAGtgataaaaagaaaaatacttGGATCATAAATACAACCAAAGTGAAAGACGTAAACAAACATGCAGCAACTGTTAAATGGAAATTTGCAGAACACAATACATACAGGATTTGGGACCATAAAAGAGGAAAGAGCAGATCACAGAtgagatggtcggatgacctaaaaagatcCGCAGAGACCAGATGGACAGGATTAGCACTGAACCGGAAAGAGTGGAAAataagggcaatagatagatag
Protein Sequence
MTDLFKNEPENLSFEFTELEDQIKPYYIDKGVRPKEIKIEQCNNDLKFEVNENDLKYQIVHTEGMELEPNVMDDNSKDAEINEKGVHSLVVKDSVVGDMLEDEGEKQFQCTICFKQLASKTNLNRHLLTLHKGIKAFYCKICGKRFTAKTSLINHVRSHYGERPFKCKDCPRRFNNRSALNAHTRLHTGQNLLKCEYCSKQFTGKTQFQIHLRVHAEEKPFKCTICSLQVTTQNSLNRHLLSHKGIKLFQCRICGKRLTTKPSLDYHVLAHYGERPFQCNVCLRQFRNNSLLNKHTRLHTGENLLRCEYCSKEFTVNSQLQIHLRVHAEEKPFKCTICSTQFTTKASLNRHLFNHTGIKPFECGMCSKRYTSKTSLIHHMRSHSGETSSIQCDICSQQFKNQSLLTVHMKLHTDEKLLKCEYCSKQFTGNYKFQIHLLTHKGDKTFKCDICDKKFSNNDECILHRSTHTTNSPEQEQGDKLFELETIGDKEDKPFECDICYKKFWDNDQFLTHKRTHTIENSFECKICFEDFTESTTTLATHMRLHTEEKIFKCDKCPKEFRKKYLLQRHLRRHLKKHVGNKPFECDLCDKKFSYNNECILHRSTHTTDSVENQLDKLKCGICSQVFTENEQLAQHKFVHIEEPQQCVVESLKFKQIDSSIENLQCHIKETIFKCNICSEEFSESDQLTQHMVLHTEETVLQQIACDNSFRMSPKTGQTTDEKQHRDLFKNKSEKVSFKSTEGKDQIKPKYHSNEIQTEKCNNDLKFEVNESDLKYQIVHTEGMEFEQNVIDDNLKDAERNEKGVHSTVVVNDSVVGDMLENREEKLFQCKICRKQFNQKQNLHRHFSTLHQGIKAFCCKICGKRFTAKTTLIHHTRIHSGETPFKCTICPKQFRDKSSLNIHMRLHTGEKLLKCEYCSKQFTGNYKFQIHLRVHAEEKPFKCTICSTQFTTKASLNRHLFNHTGIKPFECGMCSKRYTSKTSLIHHMRSHSGETSSIHCDICSQQFKDQSLLTVHMKLHTDEKLLKCEYCSKQFTGNYKFQIHLLTHKGDKTFKCDICDKKFSNNDECILHRSTHTTNSPEQEQGDKLFQLETIGDKEDKPFECDICYKKFWDNDQFLTHKRTHTIENSFKCQICFEDFTESTTLATHMRLHTEEKIFKCDKCPEEFRKKYLLQRHLRRHLKKHVGNKPFECDLCDKKFSNNNECILHRSTHTTDSVEQVFMDPQKLNLQMKVHLDKLKCYICSQVFTEDNQLAQHKCCILHRSVVHSLGSLEQVFKDPQKLNLQMKVHLDRLKCYICSQVFTEDDQLAQHKCIHIEEPQQCIVDSQKIKQIDSSIQHLRCHIKETFFKCNICSEEFTDSDQLTQHMVLHTEETVLQQIAGDTSSRMSPETGQTTDEKQHRDLFKDKPENVSFQSTEGEDQIKPNYHSNEIHIAQCNNDLKFEVNESDLKYQILHTEGMEFKPNVINDNSEDAERNETGVHSTIVVNDSVVGDMLEDRGEKLFQCKICLKQFNQKQNLHRHFSTLHQGIKGFYCKICGKRFTSKASLIYHVRAHSGETPFKCKVCPRQFRDNRLLNKHTRLHTGENLLKCEYCSKEFTGNYKFQIHLLVHAEEKPFKCTICSAQFTTNASLNRHLFNHKGIKPFECGVCLKRFTTKTSLIYHIRSHSGETPFKCKICPKQFRNKSRLNRHLRLHSSENLLKCEYCSKQFTENCEFQRHLSTHKPFELKTIGDQPFECDICYKKFWDNDQCLTHKRTHTIENSFKCQICFEDFMESTTLATHMRLHTEEKSGMLRTYPQKPVEDKPFECDICDKKFSNNNECIRHRSTHTTDSPGQVFIDPQTLNLQIKVHLDEFKYDICSQVFTESDQLTHHNFVRIEEPQQRIVDSLKFKQIDSSIENLQCDIKETILKCNICFEEFTDGDQLTQHMVLHTEETVLQQIACDTSSRVSPEADQTIETWTFTKENMEMMANTQRAMERQMLGIKLSDKKKNTWIINTTKVKDVNKHAATVKWKFAEHNTYRIWDHKRGKSRSQMRWSDDLKRSAETRWTGLALNRKEWKIRAIDR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-