g90444.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML019475.1:80096-92578[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.1 6e+03 0.1 6.4 15 43 165 190 124 191 0.68 2 9 2.1 4.2e+03 0.6 0.1 19 28 198 207 195 216 0.87 3 9 0.0024 4.6 10.0 4.8 15 43 221 246 209 247 0.87 4 9 0.00022 0.43 13.3 2.4 18 40 253 272 249 275 0.92 5 9 0.01 20 8.0 0.5 19 43 282 303 272 304 0.84 6 9 0.5 9.7e+02 2.6 0.8 4 30 296 322 293 331 0.81 7 9 0.0031 6.1 9.6 1.3 15 43 335 360 319 361 0.82 8 9 0.0019 3.8 10.3 1.0 4 43 353 389 350 391 0.80 9 9 2.1 4.2e+03 0.6 0.4 9 27 388 406 383 410 0.78
Sequence Information
- Coding Sequence
- ATGGAAGTAAATCAAGAAGTTATGGAGAATACATGTAAATTAGAAATAGATAATAATGAAGTGGATGATAATGATGCTCTTCTGCTTACCTTTAAAACTGAAATTAAAGAGGAACCGGAGATAGATACTACTAATTCTGATGATTTCAACTGTAATAAGAAACATCCTGTAAAGACAGAAATAGAAAGCCATGAAGATGCAGTTTGTCTCCTTCAAGTAAAAGAAGCACATGAAAGTTTCAAATGTGAAGATAGACTAACTGATGAAAATAATGAATTCAAAAATCATCTTATAAATAACCAATTTAACCAATGTACAACTGACGCTAGGAAAGTGAATATTGTTGAAAAGCCTTTTGCATGTGAAAAGAAAAAATTAAGAAGACATTTGATCGTTCCCACTGGAGAAAAATTATTTGGATGTGAAATATGCACAAAACAGTTTGTAACACATAATGAGTTAAAAGTACATATGGcggtgcatactggtgaaaaaccatttagaTGTGAACTATGCACACAACAGTTTTTACAAAGTTCTTACTTAAGAGTTCATATGATGAGAAGGCACACTGGTAAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTGTTAAAAATATTGAGTTAAAATTGCATATGGcggtgcatactggtgaaaaattTGGATGTGAAATTTGTACAAAACAGTTTTCACGTTGTAAATCCTTAAAATATCATATAATGAGAAAGCACACTGGTAAAATTTCATTTCGATGCGAAATTTGCTCCAAAGAGTATTCACAacattctaatttaaaaaaacatttgagaatTCACAGTGGGGAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCAAGAAGTGACTACCTAAAAGATCATATGTTGAGATGGCACACCGATGAAAAACCATTTGGATGTGAAATATGCACAAAATCGTTTGTTAAACATCATGAGTTAAGATTGCATAGGAtggtgcatactggtgaaaaaccatttagaTGTGAAATATGCACAAAACAGTTTTCAAGAAGTGACTACCTAAAAGATCATATGTTGAGATGGCACACCGATGAAAAACCATTTGGATGTGAAATATGCACAAAACAGTTTTCACGAAGTATTTCCTTAAAATTTCATATAGTAGGAAAGCACAACACTGATCAAAAACTGTTTGGATGTGAAATGTGCACAAAACAGTTTGTAACACAATTGACTTAA
- Protein Sequence
- MEVNQEVMENTCKLEIDNNEVDDNDALLLTFKTEIKEEPEIDTTNSDDFNCNKKHPVKTEIESHEDAVCLLQVKEAHESFKCEDRLTDENNEFKNHLINNQFNQCTTDARKVNIVEKPFACEKKKLRRHLIVPTGEKLFGCEICTKQFVTHNELKVHMAVHTGEKPFRCELCTQQFLQSSYLRVHMMRRHTGKKPFGCEICTKQFVKNIELKLHMAVHTGEKFGCEICTKQFSRCKSLKYHIMRKHTGKISFRCEICSKEYSQHSNLKKHLRIHSGEKPFGCEICTKQFSRSDYLKDHMLRWHTDEKPFGCEICTKSFVKHHELRLHRMVHTGEKPFRCEICTKQFSRSDYLKDHMLRWHTDEKPFGCEICTKQFSRSISLKFHIVGKHNTDQKLFGCEMCTKQFVTQLT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437393;
- 90% Identity
- iTF_00437393;
- 80% Identity
- iTF_00437393;