g51851.t2
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML016034.1:319467-320591[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.046 90 5.9 0.4 19 40 12 30 5 32 0.90 2 11 0.014 27 7.6 1.1 3 40 25 58 23 61 0.77 3 11 0.046 89 5.9 0.4 19 40 68 86 62 89 0.90 4 11 0.013 25 7.7 1.0 3 40 81 114 79 117 0.77 5 11 0.037 72 6.2 0.1 19 40 124 142 118 144 0.90 6 11 0.0017 3.4 10.5 0.3 3 40 165 198 163 201 0.84 7 11 0.0039 7.7 9.3 0.8 6 40 196 227 194 230 0.84 8 11 0.27 5.4e+02 3.4 6.7 6 40 225 256 224 284 0.87 9 11 0.84 1.6e+03 1.9 0.5 8 28 285 304 282 311 0.79 10 11 0.71 1.4e+03 2.1 0.5 8 29 313 333 308 341 0.79 11 11 0.31 6e+02 3.3 1.1 8 40 341 369 337 371 0.73
Sequence Information
- Coding Sequence
- ATGAGAGTACATACTGGGGATAAACCTTTTCCATGTGAGATTTGCTCCAAAACGTTTTCATTAAAATCCAGTTTAAAAGCGCATATGAGAATACACACTGGTGATAAACcttttgaatgtgaaatttgctccAAGAGTTTTTCAAATAGATTCGGGTTATCAGAACATATGAGAGTACATACTGGGGATAAACCTTTTCCATGTGAGATTTGCTCCAAAACGTTTTCATTAAAATCCAGTTTAAAAGCGCATATGAGAATACACACTGGTGATAAACcttttgaatgtgaaatttgctccAAGAGTTTTTCAAATAGATTCGGGTTATCAGAACATATGAGAGTACATACTGGGGATAAACCTTTTCCATGTGAGATTTGCTCCAAAACGTTTTCATTAAAATCCAGTTTAAAAGCGCATATGAGAATACACACTGGTGATAAACCTTTTGAATGTGAAATTGGTTCCAAATGTTTTTCACAAAGATCCAGTTTAAAAGACCATATGCGATTACACACTGGGGATAAACCTTTTGTATGTGAAATTTGCTCCAAGAGTTTTTCAAATAGATCCGGTTTATTAGAACATATGAGAATACACACTGGTGGTGATAAACCATTTGTATGTGAAATTTGCTCCAAGAGTTTTTCAAATAGATCCGGTTTATTAGAACATATGAGAATACACACTGGTGGTGATAAACCATTTGTATGTGAAATTTGCTCCAAGAGTTTTTCAAATAGATCCGGTTTATTAGAACATATGAGAATACACACTGGTGGTGATAAACCATTTGTATGTGAAATTTGCTCCAAGAGTTTTTCACAAAGATGCACGTTAGAAGAACATGTGAGAGTACATACTGACGATAAACTTTTTGCATGTGAAATTTGCTTCAAAAGATTTTCACAAAGATGCACGTTAGAAGAACATGTGAGAGTACATACTGACGATAAACTTTTTGCATGTGAAATTTGCTTCAAAAGATTTTCACAAAGATGCACGTTAGAAGAACATGTGAGAGTACATACTGACGATAAACTTTTTGCATGTGAAATTTGCTTCAAAAGATTTTCACAAAGATGCGGGTTAGCAAAACATATGAGAGTACATACGGGGTCCTGA
- Protein Sequence
- MRVHTGDKPFPCEICSKTFSLKSSLKAHMRIHTGDKPFECEICSKSFSNRFGLSEHMRVHTGDKPFPCEICSKTFSLKSSLKAHMRIHTGDKPFECEICSKSFSNRFGLSEHMRVHTGDKPFPCEICSKTFSLKSSLKAHMRIHTGDKPFECEIGSKCFSQRSSLKDHMRLHTGDKPFVCEICSKSFSNRSGLLEHMRIHTGGDKPFVCEICSKSFSNRSGLLEHMRIHTGGDKPFVCEICSKSFSNRSGLLEHMRIHTGGDKPFVCEICSKSFSQRCTLEEHVRVHTDDKLFACEICFKRFSQRCTLEEHVRVHTDDKLFACEICFKRFSQRCTLEEHVRVHTDDKLFACEICFKRFSQRCGLAKHMRVHTGS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437283;
- 90% Identity
- iTF_00437283;
- 80% Identity
- iTF_00437283;