g84566.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML018551.1:93880-104135[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00037 0.72 12.6 5.5 11 44 79 109 73 109 0.91 2 9 0.013 25 7.7 3.4 5 39 102 133 102 137 0.83 3 9 6.9 1.3e+04 -1.1 9.5 17 40 142 162 130 192 0.70 4 9 0.17 3.3e+02 4.1 2.6 2 38 184 216 183 221 0.77 5 9 0.039 76 6.1 3.5 5 39 215 245 211 252 0.73 6 9 0.0014 2.7 10.8 0.3 14 40 251 274 243 277 0.81 7 9 0.011 22 7.9 0.6 17 34 282 296 276 306 0.77 8 9 0.054 1e+02 5.7 2.5 10 40 304 330 295 333 0.78 9 9 0.22 4.3e+02 3.7 7.3 5 39 327 357 323 364 0.81
Sequence Information
- Coding Sequence
- ATGGAAACCAAAGAAGATGTAAAATATATTAAAGTTGAAGTTAAAGAAGAGTACGAGGATGATTTAGAATCGAAAATATCCACATACACTCCCATCTCCTCAGAAATTAAAATTGAAGATGTTGAAGGATTTGCTAAAGATGAGCCAGGAATTTTCCTACCAGAGATTAAAATGGAAAATATGAAAACAGAAACAAAAGACTTCTCTAATAAGATACACGATTCTCTAGATGATACTGAAAAAGAAAAATTCAGTGAATGTGAAATTTGCCACAAGAAATTCAAAGAAAGAAAACACCTGAATCAACACATGAGGAGGTTACATAAAGAAAGAAAATCTCTCGAATGTGAGATTTGCTCCAAATCGTTTTCTGCTGGTTTTTCTTTAAGGAACCATATGCGCATCCACACTGGGGAGATGCCTTTCCAATGCAAAATCTGTTCAAGGAAGTTTACCAGAAAGGATTTCATGAAAAAACACTTGATCACACACAGCGAGGAAAAATCTTACACATGTGAAGTTTGCTTGAGACCCTTTTCACTATTGTCTAATCTGCAAAGACATATAAGAATTCACACAGGTGAGAAACCTTACCAATGTGacatttgtttaaaacagttttccgACAACAATCACTTAAAACGACATACTCGATcacatactggagaaaagcccTTCAAGTGCAACTTTTGTCCAAAAGCATTTTCACAACAATGCAATTTGACTAGCCATATAACGATTCACACTGGCGAAAAACCTTACAACTGTGAAATTTGCTCACAGCAGTTTTCACGACCGTCTAATTTGCGATCACATATGGTAGTTCACAGCGGGGAGAAGCCATACAAATGTGACATTTGTTCTAAGCAGTTTTCCCGCAGTTTTCATCTAAAGGACCACATTCGGGGGCATAGTGGAGAAAAGCCTTTCAAATGTGAATTTTGTTCCAAAGAATTTTCACAACGATGCAATTTAAGAAGCCATGTAAGGTTGCACACTAATGACAAACCTTACAAATGTGATATTTGTTACAAAGAATTATCACGAGGTTGTCATTTAAAGCGCCATATGCTACTGCACGTGAACGAGACACCTGTCAAATGTTAG
- Protein Sequence
- METKEDVKYIKVEVKEEYEDDLESKISTYTPISSEIKIEDVEGFAKDEPGIFLPEIKMENMKTETKDFSNKIHDSLDDTEKEKFSECEICHKKFKERKHLNQHMRRLHKERKSLECEICSKSFSAGFSLRNHMRIHTGEMPFQCKICSRKFTRKDFMKKHLITHSEEKSYTCEVCLRPFSLLSNLQRHIRIHTGEKPYQCDICLKQFSDNNHLKRHTRSHTGEKPFKCNFCPKAFSQQCNLTSHITIHTGEKPYNCEICSQQFSRPSNLRSHMVVHSGEKPYKCDICSKQFSRSFHLKDHIRGHSGEKPFKCEFCSKEFSQRCNLRSHVRLHTNDKPYKCDICYKELSRGCHLKRHMLLHVNETPVKC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00437328;
- 90% Identity
- iTF_00437328;
- 80% Identity
- iTF_00437328;