g35006.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015485.1:783360-784556[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-06 0.00033 23.0 0.0 5 38 1 34 1 39 0.92
Sequence Information
- Coding Sequence
- ATGATACGGGCTGTAAATACAGTAAGAAATAGAGAGATGGGCTATTTGAAGGCCTCAAAAGTTTTTGGAGTTCCAAAAGGTATCTTAGAACGATATGTGAAATCAGACAAAACTCCAGAAGAACTCGTCGGGATATCAATTGGCCGAAGACCTATTCTTCCTTTGGAATTAGAAAATGAGTTGGTTGAATATGCCCTAACTATGGAGCAACGTTATTTCGGGCTAAGAGCGCGTGATATAAAACGACTGGCATTTCAACTTGCAATACGAAACTCAATACCACATCCATTTAGCGGAATCAAAAAATCAGCCGGAAAGAAATGGTTGAGAGTCTTTCTGAAAAGGCATCCGACTCTTTCAATGCGTACTTCTCAGGGAATGTCATCTGCTCGAGTAAAATTGTTTACTCCTGAAAATGTATCCAAGTTCTTTGACCTGTATGAACCAGAATATCTTAAGCTTACTAACCCTGCACAACGTATATTCAATGTAGACGAAACAGGCCTTACAATTGTTCAGCACAAACATAGCAAAGTAATTTCTATGAGAGGGAAGAAGCAGGTTTCGTCACTTACTTCAGCAGAAAGGGACAAGCTGATTACTGTTATTACATGTATGAATGCTGCAGGAGTTTTCGTACCACCATTATTAATCTTCCctagaaaaaatatgaaaacagaGTTGATGCTAGGAGCTCCCACTGGAGTAGTCGCAGAATGCCATGTGTCAGGTTGGGTACAGGGCGATATTTTCACTAGATGGCTTCAACACTTCATAAAATTCACTAAACCTTCAGCTGCAGACCCTGTTTTTCTCGTCCTTGATGTTCACTATTCTCATACGAGAAACGTTGCTTTAATAGATTTGGCCAAACAGAATAATGTGACAATTATTTGCCTCCCACCACATTCTACATATAAAATGCAACCGTTGGATGTTGCTTTTATGGCACCGCTGAAAACTTACTACgcacaagaaatagaaaactggCTTAGAGAAAATCAGTTGAGTGTTGCGTCGCCTTATGCCGTTGCCAGTATTTTTTGTAAAGCGTATAACAAAGCTGTGACGATGGAAATATCTTGCAATGGTTTCCGAAAAACTGGACTGGTCCCTATTTGTCGCCATATTTTTAGGGACTTTGAATTTGGAATCAAGAGCACTTGGAAACACAAAACGAAAGGGACGAACAAATAA
- Protein Sequence
- MIRAVNTVRNREMGYLKASKVFGVPKGILERYVKSDKTPEELVGISIGRRPILPLELENELVEYALTMEQRYFGLRARDIKRLAFQLAIRNSIPHPFSGIKKSAGKKWLRVFLKRHPTLSMRTSQGMSSARVKLFTPENVSKFFDLYEPEYLKLTNPAQRIFNVDETGLTIVQHKHSKVISMRGKKQVSSLTSAERDKLITVITCMNAAGVFVPPLLIFPRKNMKTELMLGAPTGVVAECHVSGWVQGDIFTRWLQHFIKFTKPSAADPVFLVLDVHYSHTRNVALIDLAKQNNVTIICLPPHSTYKMQPLDVAFMAPLKTYYAQEIENWLRENQLSVASPYAVASIFCKAYNKAVTMEISCNGFRKTGLVPICRHIFRDFEFGIKSTWKHKTKGTNK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00436724;
- 90% Identity
- -
- 80% Identity
- -