g102543.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML022864.1:28981-29592[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.7e-08 2.3e-05 26.7 0.0 2 38 15 51 14 57 0.93
Sequence Information
- Coding Sequence
- ATGCCACGCAGTAAACAAGGTATAAAACGAACACCACTTGATAAAGAGCAGTTGCGGCAGGCCGTTCAGATGTTACGAGAAAAGAAAATGTCTTTATTTGCGACAGctaaacattttaatattagTAGAACTACTCTGAGGCGTCATTTTGAACATTGTACTGATACAGGAAAGGAAATTAGTACCTTACACGATAATTTAATGCACCATAAAGTCTTTACAGATGAAGAAGAGCTAATGTTGTGCGATTATATTAAAGAGGCTGCAGATTTAGAGTATGGATTGACATTAAAAAACGTTCAAATTGTAGCCTATCAGTTTGCAAAgcataataataaaaagtatccTAAAACATGGGATGAGCACAATATGGCCGGAGATTACTGGTTACGCATTTTTCGCAAAAGACATCCACAACTTAGTTTACGAAAGCCAGAAGCCACAAGTTTAGCCCGTTCGACTGCTTTCAATAAAACCAACGTAGCTGCAACATTTACAAACTATAAGACTGCATTGTCAAAGTTTTCTGAGATTTTACCTTCTGCTATATGGAACATTGATGAAACCGGACTCTCCACTGTACATGCTCCACCAAAAATTTTTGGACCTTAA
- Protein Sequence
- MPRSKQGIKRTPLDKEQLRQAVQMLREKKMSLFATAKHFNISRTTLRRHFEHCTDTGKEISTLHDNLMHHKVFTDEEELMLCDYIKEAADLEYGLTLKNVQIVAYQFAKHNNKKYPKTWDEHNMAGDYWLRIFRKRHPQLSLRKPEATSLARSTAFNKTNVAATFTNYKTALSKFSEILPSAIWNIDETGLSTVHAPPKIFGP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00436746; iTF_00988022;
- 90% Identity
- iTF_00436746;
- 80% Identity
- -