g71789.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML017222.1:52237-52888[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00011 0.026 16.9 0.0 6 39 28 60 23 64 0.87 2 2 0.016 3.8 10.0 0.0 22 39 105 122 102 126 0.83
Sequence Information
- Coding Sequence
- ATGCCAAACGCACTGAAGAATAATAAGAACAGAGTAGAAAAGGTAAAAATACCTAAATTCCAGTACTCACCTTCAAAAGTAAATTTAGCATTAAATGGAATATCCGAAGGAATGCCTGTGGCCACAGCCAGTCGTGAATTTAAAGTTCCGAGAAAAACTTTGCGTAATAAAATATCCGGAAAGTCTCCAAGAGATTCAGTGCACTGTGAATTCGACTCTCACTTGGGAAAAGAGACTGAAGACCTCCTAGTTGAATGGACATTAACTTCTGCGAAGATGGGGTTTCCAATTGATAAAGATTGGTTGGCCACAGCCAGTCGTGAATTTAAAGTTCCGAGAACTACTTTGCGTAATAAAATATCCGGAAAGTCTCCAAGAGATTCAGTGCACTGTGAATTCGACTCTCACTTGGGAAAAGAGACTGAAGACCTCCTAGTTGAATGGACATTAACTTCTGTGAAGATGAGGTTTCCAATTGATAAAGATTGGTTATTGAGTTCAATAATAAAACTAGACTACACTAGATAA
- Protein Sequence
- MPNALKNNKNRVEKVKIPKFQYSPSKVNLALNGISEGMPVATASREFKVPRKTLRNKISGKSPRDSVHCEFDSHLGKETEDLLVEWTLTSAKMGFPIDKDWLATASREFKVPRTTLRNKISGKSPRDSVHCEFDSHLGKETEDLLVEWTLTSVKMRFPIDKDWLLSSIIKLDYTR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -