g6952.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015028.1:2529661-2530314[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-06 0.00078 21.8 0.0 5 42 2 39 1 40 0.95 2 2 0.57 1.3e+02 5.1 0.0 25 36 64 76 62 81 0.84
Sequence Information
- Coding Sequence
- ATGCTTGAACGAGCTGTGGAAGCGGTGAGAGGAGGTTTAAGTTCCCGTCAGGCAGAAGAACGTTTTAAGTTGCCATGCCGAACTATTCTGAATAAAATTAAACGAACGCATGTTTCCTCTATTGGCCATCTCCTTACACTCACTAAAATAGAAGAACGTCATTTAGTGGATGTTGTTATAGTAAGTGCAGAATATGGTATTCCTTTAACAAGCCTAGAGATTAGAATGCTTGTCAAACAATATTTAGATGCCAGAGGAACTCGAGTTGTTTATTTCTCTAACAACAATCTTCCTAGTTGTGACTGGGTCAAGGCTTTTTTGTCACGACATAAGCACATTTTAACTCAAAGGCACTGCCAAAACGTTAAACGATCCAGGGCAGCCAACACTGAAGAAATCATAGagggatattttaataatttaaaaataacacttgaAAACATCGAACCTGAAAATATCCTAAATTATGACGAGACAAATCTGTCAGATGACCCTGGTACCCAAAAATGTGTATTTCTACGAGGGACAAAATACCCGGAAAGATACATTTATGCCACTAAAAGCGCAGTGTCTCTAATGTTCGCAGCTAACGCAACAGGAGAACGCCTACGGATGTCGTTTATAAAGCTGAAAGATTATATGATAGATAGATAA
- Protein Sequence
- MLERAVEAVRGGLSSRQAEERFKLPCRTILNKIKRTHVSSIGHLLTLTKIEERHLVDVVIVSAEYGIPLTSLEIRMLVKQYLDARGTRVVYFSNNNLPSCDWVKAFLSRHKHILTQRHCQNVKRSRAANTEEIIEGYFNNLKITLENIEPENILNYDETNLSDDPGTQKCVFLRGTKYPERYIYATKSAVSLMFAANATGERLRMSFIKLKDYMIDR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00436654;
- 90% Identity
- iTF_00436632; iTF_00436654; iTF_00436608;
- 80% Identity
- -