g104445.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML024099.1:5689-6231[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-07 5.4e-05 25.5 0.1 2 42 19 58 18 59 0.92 2 2 8.6 2e+03 1.3 0.0 22 36 80 95 80 100 0.86
Sequence Information
- Coding Sequence
- ATGCCAAGAAGAATCAGAAAAAAATTGGGAGCAAGGCAGTATGTAAACTACTCTGAAACCATGCTTGAACGAGCTGTGGAAGCAGTGAGAGGAGGTTTAAGTTCCCGTCAGGCAGAACGTTTTAAGGTGCCACGCCGAACCATTCTGAATAAAATTAAACGAACGCATGTTTCCTCCATTGGCCATCCCCTTACACTCACTAAAATAGAAGAACGTCATTTAGTGGATGTTGTTATAGCAAGTGCAGAATATGGTGCTCCTTTAACAAGCCTAGAGATTAGAATGCTTGTCAAACAATATTTAGATGCCAGAGGAACTCGAGTTGTTTATTTCTCTAACAACAATCTTCCTAGTTGTGACTGGGTCAAGGCTTTTTTGTCACGACATAAGCACATTTTAACTCAAAGGCACTGCCAAAACGTTAAACGATCCAGGGCAGCCAACACTGAAGAAATCATAGagggatattttaataatttaaaaataacacttgaAAACATCGAACCTCAAAATATCCTAAATTATGACGAGACAAATCTGTGA
- Protein Sequence
- MPRRIRKKLGARQYVNYSETMLERAVEAVRGGLSSRQAERFKVPRRTILNKIKRTHVSSIGHPLTLTKIEERHLVDVVIASAEYGAPLTSLEIRMLVKQYLDARGTRVVYFSNNNLPSCDWVKAFLSRHKHILTQRHCQNVKRSRAANTEEIIEGYFNNLKITLENIEPQNILNYDETNL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00436756;
- 90% Identity
- -
- 80% Identity
- -