g13020.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015092.1:143192-143693[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-09 1.4e-06 30.6 0.1 2 42 19 59 18 60 0.92 2 2 5.7 1.3e+03 1.9 0.0 22 36 81 96 81 101 0.86
Sequence Information
- Coding Sequence
- ATGCCTAgaaaaagcagaaaaaaattggGAGCAAGGCAGTATGTAAACTACTCTGAAGCCATGCTTGAACGAGCTGTGGAAGCAGTGAGAGGAGGTTTAAGTTCCCGTCAGGCAGAAGAACGTTTTAAGGTGCCACGCCGAACTATTCTGAATAAAATTAAACGAACGCATGTTTCCTCCATTGGCCATCCCCTTGCACTCACTAAAATAGAAGAACGTCATTTAGTGGATGTTGTTATAGCAAGTGCAGAATATGGTGCTCCTTTAACAAGCCTAGAGATTAGAATGCTTGTCAAACAATATTTAGAGGCCAGAGGAACTCGAGTTCGCGTCGAGAGAACAACAATCTTCCTAGTTGTGACTGGGTCAAGGCTTTTTTGTCACGACATAAGCACATTTTAA
- Protein Sequence
- MPRKSRKKLGARQYVNYSEAMLERAVEAVRGGLSSRQAEERFKVPRRTILNKIKRTHVSSIGHPLALTKIEERHLVDVVIASAEYGAPLTSLEIRMLVKQYLEARGTRVRVERTTIFLVVTGSRLFCHDISTF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00436624;
- 90% Identity
- iTF_00436601;
- 80% Identity
- -