g70727.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML017142.1:48103-51613[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-10 5e-08 35.2 0.0 2 40 16 53 15 57 0.92
Sequence Information
- Coding Sequence
- ATGCCTAATTTTTACAAACGAAAGACTTCGCAGCAGAGTTGGGACGAGAAGGCAATGGCTGAGGCTCTAACTGCATGTCAAGGTGGTTTATCAATTCATTCTTCTGCAAAACAATATAACATTCCATCGACAACTCTTTTTAGAAGATTAAAGCGACCACCAGAAGAACGTTTAGTGAAGCAACTTGGACGATTCCGTTGCGTGTTCACGGTAGATCAAGAGAGGATGTTGGTAGACTATATTCTTAAAATGGAAGAACGCCTGTTTGGGCTAACTATTTCTGACTTAAAATATCTTACCTACGAGTTTGCCATACGAAATAACATTGAACATAGATTCaataatgagaagagagaagcTGGTAAAGTATGGTTGCTTGGTTTTATGAAACGGCACCCAGTTCTTTTACTTCGACTTCCAGAAAAAACGTCAGCAGCGCGAGCGTCAGCATTTAACGCAGTATTTGACAAAGTAAACAGACTAGATCAAGATTTAAATGCTTTACAAAACAATTGA
- Protein Sequence
- MPNFYKRKTSQQSWDEKAMAEALTACQGGLSIHSSAKQYNIPSTTLFRRLKRPPEERLVKQLGRFRCVFTVDQERMLVDYILKMEERLFGLTISDLKYLTYEFAIRNNIEHRFNNEKREAGKVWLLGFMKRHPVLLLRLPEKTSAARASAFNAVFDKVNRLDQDLNALQNN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00436514;
- 90% Identity
- iTF_00436514; iTF_00436515; iTF_00436517; iTF_00436518; iTF_00436519; iTF_00436520; iTF_00436521; iTF_00436522; iTF_00436523; iTF_00436524; iTF_00436525; iTF_00436595; iTF_00436597; iTF_00436544;
- 80% Identity
- -