g20779.t1
Basic Information
- Insect
- Diabrotica virgifera
- Gene Symbol
- -
- Assembly
- GCA_003013835.2
- Location
- ML015199.1:918250-918765[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-10 2.7e-08 36.1 0.0 5 41 19 56 16 57 0.90
Sequence Information
- Coding Sequence
- ATGGTGTTTAAATACAAACGTGTCACCCAGAGGCAGAGCTGGTCTACACAGTCTATGGAAGGGGCGGTCAGAGCTGTAATCAACGGCGAAATGGGACATTACCGTGCATCGGTTCAGTTTAATGTCCCACAAACCACACTCGAACGTTAtgtgaaaaaacgaaaaaatgatcCAGATGTGCCTATTGCAAAAACTATGGGAAATTACAAGCCAGTTTTTACACAGACGCAGGAACAGGAAATCGCTGGTTACctaaaaaatatggaagaacgATTATTTGGGTTTACGATGGAAGAATGCAGAGGTCTCGCCTTTCAGTTAGCTGAATTAAATGGTGTTGATCATCCATTCAACAAAAGAACTCGAATGGCTGGAAAAGCTTGGATGCAAAGCTTCTTAAAGAGACATGCGGAGCTGTCgataagaaaacctgaggctacgTCTGGAATAAGAGCTAGAGGGTTCAATACAGTTGCTGTTTCACAGTTTTTTTACACTACTGGTAGAAGTAGTTGA
- Protein Sequence
- MVFKYKRVTQRQSWSTQSMEGAVRAVINGEMGHYRASVQFNVPQTTLERYVKKRKNDPDVPIAKTMGNYKPVFTQTQEQEIAGYLKNMEERLFGFTMEECRGLAFQLAELNGVDHPFNKRTRMAGKAWMQSFLKRHAELSIRKPEATSGIRARGFNTVAVSQFFYTTGRSS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00436533;
- 90% Identity
- iTF_00436546;
- 80% Identity
- -